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RORB (RAR-related orphan receptor B)

Identity

Other namesNR1F2
ROR-BETA
RZR-BETA
RZRB
bA133M9.1
HGNC (Hugo) RORB
LocusID (NCBI) 6096
Location 9q21.13
Location_base_pair Starts at 77112252 and ends at 77302117 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RORB   10259
Entrez_Gene (NCBI)RORB  6096  RAR-related orphan receptor B
Cards
GeneCards (Weizmann)RORB
Ensembl (Hinxton)ENSG00000198963 [Gene_View]  chr9:77112252-77302117 [Contig_View]  RORB [Vega]
AceView (NCBI)RORB
Genatlas (Paris)RORB
SOURCE (Stanford)NM_006914
Genomic and cartography
GoldenPath (UCSC)RORB  -  9q21.13   chr9:77112252-77302117 +  9q21.13   [Description]    (hg19-Feb_2009)
EnsemblRORB - 9q21.13 [CytoView]
Mapping of homologs : NCBIRORB [Mapview]
OMIM601972   
Gene and transcription
Genbank (Entrez)AB307695 AK313431 AL118995 AL691650 BC051830
RefSeq transcript (SRS)NM_006914
RefSeq transcript (Entrez)NM_006914
RefSeq genomic (SRS)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839221 NW_004078058
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839221 NW_004078058
Consensus coding sequences : CCDS (NCBI)RORB
Cluster EST : UnigeneHs.494178 [ SRS ] Hs.494178 [ NCBI ]
CGAP (NCI)Hs.494178
Alternative Splicing : Fast-db (Paris)GSHG0030192
Alternative Splicing GalleryENSG00000198963
Gene ExpressionRORB [ NCBI-GEO ]   RORB [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92753 (SRS) Q92753 (Uniprot)
NextProtQ92753
With graphics : InterProQ92753
Splice isoforms : SwissVarQ92753(Swissvar)
Domaine pattern : Prosite (SRS)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (SRS)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    ROR_rcpt    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd    Nucl_hrmn_rcpt_lig-bd_core    ROR_rcpt    Str_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Related proteins : CluSTrQ92753
Domain families : Pfam (SRS)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM6096
Blocks (Seattle)Q92753
Human Protein AtlasENSG00000198963
HPRD09062
IPIIPI00023259   IPI00827604   
Protein Interaction databases
DIP (DOE-UCLA)Q92753
IntAct (EBI)Q92753
FunCoupENSG00000198963
REACTOMERORB
Protein Interaction Database6096
BioGRIDRORB
InParanoidQ92753
Interologous Interaction database Q92753
IntegromeDBRORB
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RORB
SNP (GeneSNP Utah)RORB
SNP : HGBaseRORB
Genetic variants : HAPMAPRORB
Somatic Mutations in Cancer : COSMICRORB 
CONAN: Copy Number AnalysisRORB 
Mutations and Diseases : HGMDRORB
OMIM601972   
GENETests601972   
Disease Genetic AssociationRORB
Huge Navigator RORB [HugePedia]  RORB [HugeCancerGEM]
Genomic VariantsRORB  RORB [DGVbeta]
snp3D : Map Gene to Disease6096
General knowledge
Homologs : HomoloGeneRORB
Homology/Alignments : Family Browser (UCSC)RORB
Phylogenetic Trees/Animal Genes : TreeFamRORB
Chemical/Protein Interactions : CTD6096
Chemical/Pharm GKB GenePA34631
Clinical trialRORB
Cancer Resource (Charite)ENSG00000198963
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleoplasm  regulation of transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  brain development  visual perception  circadian rhythm  zinc ion binding  melatonin receptor activity  gene expression  intracellular receptor mediated signaling pathway  eye photoreceptor cell development  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  metal ion binding  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  nucleoplasm  regulation of transcription, DNA-dependent  transcription initiation from RNA polymerase II promoter  brain development  visual perception  circadian rhythm  zinc ion binding  melatonin receptor activity  gene expression  intracellular receptor mediated signaling pathway  eye photoreceptor cell development  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  metal ion binding  
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
PubGeneRORB
iHOPRORB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:31:48 CEST 2013
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