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RORB (RAR-related orphan receptor B)

Identity

Other namesNR1F2
ROR-BETA
RZR-BETA
RZRB
bA133M9.1
HGNC (Hugo) RORB
LocusID (NCBI) 6096
Location 9q21.13
Location_base_pair Starts at 77112252 and ends at 77302117 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RORB   10259
Cards
Entrez_Gene (NCBI)RORB  6096  RAR-related orphan receptor B
GeneCards (Weizmann)RORB
Ensembl (Hinxton)ENSG00000198963 [Gene_View]  chr9:77112252-77302117 [Contig_View]  RORB [Vega]
ICGC DataPortalENSG00000198963
cBioPortalRORB
AceView (NCBI)RORB
Genatlas (Paris)RORB
WikiGenes6096
SOURCE (Princeton)NM_006914
Genomic and cartography
GoldenPath (UCSC)RORB  -  9q21.13   chr9:77112252-77302117 +  9q21.13   [Description]    (hg19-Feb_2009)
EnsemblRORB - 9q21.13 [CytoView]
Mapping of homologs : NCBIRORB [Mapview]
OMIM601972   
Gene and transcription
Genbank (Entrez)AB307695 AK313431 AL118995 AL691650 BC051830
RefSeq transcript (Entrez)NM_006914
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NT_008470 NW_001839221 NW_004929366
Consensus coding sequences : CCDS (NCBI)RORB
Cluster EST : UnigeneHs.494178 [ NCBI ]
CGAP (NCI)Hs.494178
Alternative Splicing : Fast-db (Paris)GSHG0030192
Alternative Splicing GalleryENSG00000198963
Gene ExpressionRORB [ NCBI-GEO ]     RORB [ SEEK ]   RORB [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92753 (Uniprot)
NextProtQ92753  [Medical]
With graphics : InterProQ92753
Splice isoforms : SwissVarQ92753 (Swissvar)
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (EBI)Nucl_hormone_rcpt_ligand-bd [organisation]   Nucl_hrmn_rcpt_lig-bd_core [organisation]   ROR_rcpt [organisation]   Str_hrmn_rcpt [organisation]   Znf_hrmn_rcpt [organisation]   Znf_NHR/GATA [organisation]  
Related proteins : CluSTrQ92753
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
DMDM Disease mutations6096
Blocks (Seattle)Q92753
Human Protein AtlasENSG00000198963 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ92753
HPRD09062
IPIIPI00023259   IPI00827604   
Protein Interaction databases
DIP (DOE-UCLA)Q92753
IntAct (EBI)Q92753
FunCoupENSG00000198963
BioGRIDRORB
InParanoidQ92753
Interologous Interaction database Q92753
IntegromeDBRORB
STRING (EMBL)RORB
Ontologies - Pathways
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  visual perception  zinc ion binding  gene expression  intracellular receptor signaling pathway  intracellular receptor signaling pathway  amacrine cell differentiation  eye photoreceptor cell development  regulation of circadian rhythm  steroid hormone mediated signaling pathway  sequence-specific DNA binding  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  retinal rod cell development  retinal cone cell development  rhythmic process  retina development in camera-type eye  cellular response to retinoic acid  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  steroid hormone receptor activity  ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  transcription initiation from RNA polymerase II promoter  visual perception  zinc ion binding  gene expression  intracellular receptor signaling pathway  intracellular receptor signaling pathway  amacrine cell differentiation  eye photoreceptor cell development  regulation of circadian rhythm  steroid hormone mediated signaling pathway  sequence-specific DNA binding  negative regulation of osteoblast differentiation  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  retinal rod cell development  retinal cone cell development  rhythmic process  retina development in camera-type eye  cellular response to retinoic acid  
Pathways : KEGGCircadian rhythm   
Protein Interaction DatabaseRORB
Wikipedia pathwaysRORB
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RORB
snp3D : Map Gene to Disease6096
SNP (GeneSNP Utah)RORB
SNP : HGBaseRORB
Genetic variants : HAPMAPRORB
Exome VariantRORB
1000_GenomesRORB 
ICGC programENSG00000198963 
Somatic Mutations in Cancer : COSMICRORB 
CONAN: Copy Number AnalysisRORB 
Mutations and Diseases : HGMDRORB
Genomic VariantsRORB  RORB [DGVbeta]
dbVarRORB
ClinVarRORB
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM601972   
MedgenRORB
GENETestsRORB
Disease Genetic AssociationRORB
Huge Navigator RORB [HugePedia]  RORB [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRORB
Homology/Alignments : Family Browser (UCSC)RORB
Phylogenetic Trees/Animal Genes : TreeFamRORB
Chemical/Protein Interactions : CTD6096
Chemical/Pharm GKB GenePA34631
Clinical trialRORB
Cancer Resource (Charite)ENSG00000198963
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineRORB
iHOPRORB
OncoSearchRORB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:46:17 CEST 2014

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