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RPAIN (RPA interacting protein)

Identity

Alias_symbol (synonym)MGC4189
RIP
hRIP
Other aliasHRIP
HGNC (Hugo) RPAIN
LocusID (NCBI) 84268
Atlas_Id 50266
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 5419641 and ends at 5433020 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPAIN (17p13.2) / COL3A1 (2q32.2)RPAIN (17p13.2) / FHIT (3p14.2)RPAIN (17p13.2) / LRRC27 (10q26.3)
RPAIN (17p13.2) / MALAT1 (11q13.1)RPAIN (17p13.2) / TRIP6 (7q22.1)RPAIN (17p13.2) / ZBTB17 (1p36.13)
RPAIN 17p13.2 / FHIT 3p14.2RPAIN 17p13.2 / LRRC27 10q26.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPAIN   28641
Cards
Entrez_Gene (NCBI)RPAIN  84268  RPA interacting protein
AliasesHRIP; RIP
GeneCards (Weizmann)RPAIN
Ensembl hg19 (Hinxton)ENSG00000129197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129197 [Gene_View]  chr17:5419641-5433020 [Contig_View]  RPAIN [Vega]
ICGC DataPortalENSG00000129197
TCGA cBioPortalRPAIN
AceView (NCBI)RPAIN
Genatlas (Paris)RPAIN
WikiGenes84268
SOURCE (Princeton)RPAIN
Genetics Home Reference (NIH)RPAIN
Genomic and cartography
GoldenPath hg38 (UCSC)RPAIN  -     chr17:5419641-5433020 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPAIN  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblRPAIN - 17p13.2 [CytoView hg19]  RPAIN - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIRPAIN [Mapview hg19]  RPAIN [Mapview hg38]
OMIM617299   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001033002 NM_001160243 NM_001160244 NM_001160246 NM_001160266 NM_001160267 NM_032308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPAIN
Cluster EST : UnigeneHs.555866 [ NCBI ]
CGAP (NCI)Hs.555866
Alternative Splicing GalleryENSG00000129197
Gene ExpressionRPAIN [ NCBI-GEO ]   RPAIN [ EBI - ARRAY_EXPRESS ]   RPAIN [ SEEK ]   RPAIN [ MEM ]
Gene Expression Viewer (FireBrowse)RPAIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84268
GTEX Portal (Tissue expression)RPAIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UA6
Splice isoforms : SwissVarQ86UA6
PhosPhoSitePlusQ86UA6
Domains : Interpro (EBI)RIP    RPA_interact_C_dom    RPA_interact_central    RPA_interact_N_dom   
Domain families : Pfam (Sanger)RPA_interact_C (PF14768)    RPA_interact_M (PF14767)    RPA_interact_N (PF14766)   
Domain families : Pfam (NCBI)pfam14768    pfam14767    pfam14766   
Conserved Domain (NCBI)RPAIN
DMDM Disease mutations84268
Blocks (Seattle)RPAIN
SuperfamilyQ86UA6
Human Protein AtlasENSG00000129197
Peptide AtlasQ86UA6
HPRD14615
IPIIPI00465161   IPI00655734   IPI00651764   IPI00655768   IPI00655914   IPI00655860   IPI01014335   IPI00930099   IPI01008739   IPI00655684   IPI00936829   
Protein Interaction databases
DIP (DOE-UCLA)Q86UA6
IntAct (EBI)Q86UA6
FunCoupENSG00000129197
BioGRIDRPAIN
STRING (EMBL)RPAIN
ZODIACRPAIN
Ontologies - Pathways
QuickGOQ86UA6
Ontology : AmiGOfibrillar center  nucleus  cytoplasm  DNA-dependent DNA replication  DNA repair  DNA recombination  protein import into nucleus  PML body  protein complex binding  metal ion binding  
Ontology : EGO-EBIfibrillar center  nucleus  cytoplasm  DNA-dependent DNA replication  DNA repair  DNA recombination  protein import into nucleus  PML body  protein complex binding  metal ion binding  
NDEx NetworkRPAIN
Atlas of Cancer Signalling NetworkRPAIN
Wikipedia pathwaysRPAIN
Orthology - Evolution
OrthoDB84268
GeneTree (enSembl)ENSG00000129197
Phylogenetic Trees/Animal Genes : TreeFamRPAIN
HOVERGENQ86UA6
HOGENOMQ86UA6
Homologs : HomoloGeneRPAIN
Homology/Alignments : Family Browser (UCSC)RPAIN
Gene fusions - Rearrangements
Fusion : MitelmanRPAIN/FHIT [17p13.2/3p14.2]  
Fusion : MitelmanRPAIN/LRRC27 [17p13.2/10q26.3]  [t(10;17)(q26;p13)]  
Fusion: TCGARPAIN 17p13.2 FHIT 3p14.2 BRCA
Fusion: TCGARPAIN 17p13.2 LRRC27 10q26.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPAIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAIN
dbVarRPAIN
ClinVarRPAIN
1000_GenomesRPAIN 
Exome Variant ServerRPAIN
ExAC (Exome Aggregation Consortium)RPAIN (select the gene name)
Genetic variants : HAPMAP84268
Genomic Variants (DGV)RPAIN [DGVbeta]
DECIPHERRPAIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPAIN 
Mutations
ICGC Data PortalRPAIN 
TCGA Data PortalRPAIN 
Broad Tumor PortalRPAIN
OASIS PortalRPAIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPAIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPAIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPAIN
DgiDB (Drug Gene Interaction Database)RPAIN
DoCM (Curated mutations)RPAIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPAIN (select a term)
intoGenRPAIN
Cancer3DRPAIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617299   
Orphanet
MedgenRPAIN
Genetic Testing Registry RPAIN
NextProtQ86UA6 [Medical]
TSGene84268
GENETestsRPAIN
Huge Navigator RPAIN [HugePedia]
snp3D : Map Gene to Disease84268
BioCentury BCIQRPAIN
ClinGenRPAIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84268
Chemical/Pharm GKB GenePA145007849
Clinical trialRPAIN
Miscellaneous
canSAR (ICR)RPAIN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPAIN
EVEXRPAIN
GoPubMedRPAIN
iHOPRPAIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:28 CEST 2017

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