Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPAP1 (RNA polymerase II associated protein 1)

Identity

Alias_symbol (synonym)DKFZP727M111
KIAA1403
MGC858
FLJ12732
Other alias-
HGNC (Hugo) RPAP1
LocusID (NCBI) 26015
Atlas_Id 72774
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41517176 and ends at 41544277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAP1L4 (11p15.4) / RPAP1 (15q15.1)RPAP1 (15q15.1) / IGF2 (11p15.5)RPAP1 (15q15.1) / RAD54L (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPAP1   24567
Cards
Entrez_Gene (NCBI)RPAP1  26015  RNA polymerase II associated protein 1
Aliases
GeneCards (Weizmann)RPAP1
Ensembl hg19 (Hinxton)ENSG00000103932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103932 [Gene_View]  chr15:41517176-41544277 [Contig_View]  RPAP1 [Vega]
ICGC DataPortalENSG00000103932
TCGA cBioPortalRPAP1
AceView (NCBI)RPAP1
Genatlas (Paris)RPAP1
WikiGenes26015
SOURCE (Princeton)RPAP1
Genetics Home Reference (NIH)RPAP1
Genomic and cartography
GoldenPath hg38 (UCSC)RPAP1  -     chr15:41517176-41544277 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPAP1  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblRPAP1 - 15q15.1 [CytoView hg19]  RPAP1 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIRPAP1 [Mapview hg19]  RPAP1 [Mapview hg38]
OMIM611475   
Gene and transcription
Genbank (Entrez)AB037824 AK022794 AK290224 AK308884 AL117479
RefSeq transcript (Entrez)NM_015540
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPAP1
Cluster EST : UnigeneHs.371045 [ NCBI ]
CGAP (NCI)Hs.371045
Alternative Splicing GalleryENSG00000103932
Gene ExpressionRPAP1 [ NCBI-GEO ]   RPAP1 [ EBI - ARRAY_EXPRESS ]   RPAP1 [ SEEK ]   RPAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26015
GTEX Portal (Tissue expression)RPAP1
Human Protein AtlasENSG00000103932-RPAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWH6
Splice isoforms : SwissVarQ9BWH6
PhosPhoSitePlusQ9BWH6
Domains : Interpro (EBI)RNA_pol_II_AP1_C    RNA_pol_II_AP1_N   
Domain families : Pfam (Sanger)RPAP1_C (PF08620)    RPAP1_N (PF08621)   
Domain families : Pfam (NCBI)pfam08620    pfam08621   
Conserved Domain (NCBI)RPAP1
DMDM Disease mutations26015
Blocks (Seattle)RPAP1
SuperfamilyQ9BWH6
Human Protein Atlas [tissue]ENSG00000103932-RPAP1 [tissue]
Peptide AtlasQ9BWH6
HPRD11522
IPIIPI00402657   IPI00844387   IPI00844376   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWH6
IntAct (EBI)Q9BWH6
FunCoupENSG00000103932
BioGRIDRPAP1
STRING (EMBL)RPAP1
ZODIACRPAP1
Ontologies - Pathways
QuickGOQ9BWH6
Ontology : AmiGODNA binding  DNA-directed 5'-3' RNA polymerase activity  protein binding  nucleus  transcription from RNA polymerase II promoter  
Ontology : EGO-EBIDNA binding  DNA-directed 5'-3' RNA polymerase activity  protein binding  nucleus  transcription from RNA polymerase II promoter  
NDEx NetworkRPAP1
Atlas of Cancer Signalling NetworkRPAP1
Wikipedia pathwaysRPAP1
Orthology - Evolution
OrthoDB26015
GeneTree (enSembl)ENSG00000103932
Phylogenetic Trees/Animal Genes : TreeFamRPAP1
HOVERGENQ9BWH6
HOGENOMQ9BWH6
Homologs : HomoloGeneRPAP1
Homology/Alignments : Family Browser (UCSC)RPAP1
Gene fusions - Rearrangements
Tumor Fusion PortalRPAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAP1
dbVarRPAP1
ClinVarRPAP1
1000_GenomesRPAP1 
Exome Variant ServerRPAP1
ExAC (Exome Aggregation Consortium)ENSG00000103932
GNOMAD BrowserENSG00000103932
Genetic variants : HAPMAP26015
Genomic Variants (DGV)RPAP1 [DGVbeta]
DECIPHERRPAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPAP1 
Mutations
ICGC Data PortalRPAP1 
TCGA Data PortalRPAP1 
Broad Tumor PortalRPAP1
OASIS PortalRPAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPAP1
DgiDB (Drug Gene Interaction Database)RPAP1
DoCM (Curated mutations)RPAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPAP1 (select a term)
intoGenRPAP1
Cancer3DRPAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611475   
Orphanet
DisGeNETRPAP1
MedgenRPAP1
Genetic Testing Registry RPAP1
NextProtQ9BWH6 [Medical]
TSGene26015
GENETestsRPAP1
Target ValidationRPAP1
Huge Navigator RPAP1 [HugePedia]
snp3D : Map Gene to Disease26015
BioCentury BCIQRPAP1
ClinGenRPAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26015
Chemical/Pharm GKB GenePA134914340
Clinical trialRPAP1
Miscellaneous
canSAR (ICR)RPAP1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPAP1
EVEXRPAP1
GoPubMedRPAP1
iHOPRPAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:07 CET 2017

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