Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPAP1 (RNA polymerase II associated protein 1)

Identity

Alias (NCBI)-
HGNC (Hugo) RPAP1
HGNC Alias symbDKFZP727M111
KIAA1403
MGC858
FLJ12732
LocusID (NCBI) 26015
Atlas_Id 72774
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41517176 and ends at 41544257 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAP1L4 (11p15.4) / RPAP1 (15q15.1)RPAP1 (15q15.1) / IGF2 (11p15.5)RPAP1 (15q15.1) / RAD54L (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPAP1   24567
Cards
Entrez_Gene (NCBI)RPAP1    RNA polymerase II associated protein 1
Aliases
GeneCards (Weizmann)RPAP1
Ensembl hg19 (Hinxton)ENSG00000103932 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103932 [Gene_View]  ENSG00000103932 [Sequence]  chr15:41517176-41544257 [Contig_View]  RPAP1 [Vega]
ICGC DataPortalENSG00000103932
TCGA cBioPortalRPAP1
AceView (NCBI)RPAP1
Genatlas (Paris)RPAP1
SOURCE (Princeton)RPAP1
Genetics Home Reference (NIH)RPAP1
Genomic and cartography
GoldenPath hg38 (UCSC)RPAP1  -     chr15:41517176-41544257 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPAP1  -     15q15.1   [Description]    (hg19-Feb_2009)
GoldenPathRPAP1 - 15q15.1 [CytoView hg19]  RPAP1 - 15q15.1 [CytoView hg38]
ImmunoBaseENSG00000103932
Genome Data Viewer NCBIRPAP1 [Mapview hg19]  
OMIM611475   
Gene and transcription
Genbank (Entrez)AB037824 AK022794 AK290224 AK308884 AL117479
RefSeq transcript (Entrez)NM_015540
Consensus coding sequences : CCDS (NCBI)RPAP1
Gene ExpressionRPAP1 [ NCBI-GEO ]   RPAP1 [ EBI - ARRAY_EXPRESS ]   RPAP1 [ SEEK ]   RPAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPAP1 [ Firebrowse - Broad ]
GenevisibleExpression of RPAP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26015
GTEX Portal (Tissue expression)RPAP1
Human Protein AtlasENSG00000103932-RPAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWH6
PhosPhoSitePlusQ9BWH6
Domains : Interpro (EBI)RNA_pol_II_AP1_C    RNA_pol_II_AP1_N    RPAP1/Rba50   
Domain families : Pfam (Sanger)RPAP1_C (PF08620)    RPAP1_N (PF08621)   
Domain families : Pfam (NCBI)pfam08620    pfam08621   
Conserved Domain (NCBI)RPAP1
SuperfamilyQ9BWH6
AlphaFold pdb e-kbQ9BWH6   
Human Protein Atlas [tissue]ENSG00000103932-RPAP1 [tissue]
HPRD11522
Protein Interaction databases
DIP (DOE-UCLA)Q9BWH6
IntAct (EBI)Q9BWH6
BioGRIDRPAP1
STRING (EMBL)RPAP1
ZODIACRPAP1
Ontologies - Pathways
QuickGOQ9BWH6
Ontology : AmiGODNA binding  DNA-directed 5'-3' RNA polymerase activity  protein binding  nucleus  transcription by RNA polymerase II  
Ontology : EGO-EBIDNA binding  DNA-directed 5'-3' RNA polymerase activity  protein binding  nucleus  transcription by RNA polymerase II  
NDEx NetworkRPAP1
Atlas of Cancer Signalling NetworkRPAP1
Wikipedia pathwaysRPAP1
Orthology - Evolution
OrthoDB26015
GeneTree (enSembl)ENSG00000103932
Phylogenetic Trees/Animal Genes : TreeFamRPAP1
Homologs : HomoloGeneRPAP1
Homology/Alignments : Family Browser (UCSC)RPAP1
Gene fusions - Rearrangements
Fusion : QuiverRPAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAP1
dbVarRPAP1
ClinVarRPAP1
MonarchRPAP1
1000_GenomesRPAP1 
Exome Variant ServerRPAP1
GNOMAD BrowserENSG00000103932
Varsome BrowserRPAP1
ACMGRPAP1 variants
VarityQ9BWH6
Genomic Variants (DGV)RPAP1 [DGVbeta]
DECIPHERRPAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPAP1 
Mutations
ICGC Data PortalRPAP1 
TCGA Data PortalRPAP1 
Broad Tumor PortalRPAP1
OASIS PortalRPAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPAP1
Mutations and Diseases : HGMDRPAP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPAP1
DgiDB (Drug Gene Interaction Database)RPAP1
DoCM (Curated mutations)RPAP1
CIViC (Clinical Interpretations of Variants in Cancer)RPAP1
Cancer3DRPAP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611475   
Orphanet
DisGeNETRPAP1
MedgenRPAP1
Genetic Testing Registry RPAP1
NextProtQ9BWH6 [Medical]
GENETestsRPAP1
Target ValidationRPAP1
Huge Navigator RPAP1 [HugePedia]
ClinGenRPAP1
Clinical trials, drugs, therapy
MyCancerGenomeRPAP1
Protein Interactions : CTDRPAP1
Pharm GKB GenePA134914340
PharosQ9BWH6
Clinical trialRPAP1
Miscellaneous
canSAR (ICR)RPAP1
HarmonizomeRPAP1
DataMed IndexRPAP1
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:19:05 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.