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RPAP3 (RNA polymerase II associated protein 3)

Identity

Other names-
HGNC (Hugo) RPAP3
LocusID (NCBI) 79657
Location 12q13.11
Location_base_pair Starts at 48055715 and ends at 48099844 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)RPAP3   26151
Entrez_Gene (NCBI)RPAP3  79657  RNA polymerase II associated protein 3
Cards
GeneCards (Weizmann)RPAP3
Ensembl (Hinxton)ENSG00000005175 [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
AceView (NCBI)RPAP3
Genatlas (Paris)RPAP3
SOURCE (Stanford)NM_001146075 NM_001146076 NM_024604
Genomic and cartography
GoldenPath (UCSC)RPAP3  -  12q13.11   chr12:48055715-48099844 -  12q13.11   [Description]    (hg19-Feb_2009)
EnsemblRPAP3 - 12q13.11 [CytoView]
Mapping of homologs : NCBIRPAP3 [Mapview]
OMIM611477   
Gene and transcription
Genbank (Entrez)AK025561 AK299465 BC003680 BC056415 CA449693
RefSeq transcript (SRS)NM_001146075 NM_001146076 NM_024604
RefSeq transcript (Entrez)NM_001146075 NM_001146076 NM_024604
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
Consensus coding sequences : CCDS (NCBI)RPAP3
Cluster EST : UnigeneHs.437855 [ SRS ] Hs.437855 [ NCBI ]
CGAP (NCI)Hs.437855
Alternative Splicing : Fast-db (Paris)GSHG0007406
Alternative Splicing GalleryENSG00000005175
Gene ExpressionRPAP3 [ NCBI-GEO ]   RPAP3 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6T3 (SRS) Q9H6T3 (Uniprot)
NextProtQ9H6T3
With graphics : InterProQ9H6T3
Splice isoforms : SwissVarQ9H6T3(Swissvar)
Domaine pattern : Prosite (SRS)TPR (PS50005)    TPR_REGION (PS50293)   
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (SRS)RPAP3-like_C    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Domains : Interpro (EBI)RPAP3-like_C    TPR-1    TPR-contain_dom    TPR-like_helical    TPR_repeat   
Related proteins : CluSTrQ9H6T3
Domain families : Pfam (SRS)RPAP3_C (PF13877)    TPR_1 (PF00515)   
Domain families : Pfam (Sanger)RPAP3_C (PF13877)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam13877    pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM79657
Blocks (Seattle)Q9H6T3
Human Protein AtlasENSG00000005175
HPRD07970
IPIIPI00002408   IPI00448515   IPI00924947   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6T3
IntAct (EBI)Q9H6T3
FunCoupENSG00000005175
REACTOMERPAP3
Protein Interaction Database79657
BioGRIDRPAP3
InParanoidQ9H6T3
Interologous Interaction database Q9H6T3
IntegromeDBRPAP3
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPAP3
SNP (GeneSNP Utah)RPAP3
SNP : HGBaseRPAP3
Genetic variants : HAPMAPRPAP3
Somatic Mutations in Cancer : COSMICRPAP3 
CONAN: Copy Number AnalysisRPAP3 
Mutations and Diseases : HGMDRPAP3
OMIM611477   
GENETests611477   
Disease Genetic AssociationRPAP3
Huge Navigator RPAP3 [HugePedia]  RPAP3 [HugeCancerGEM]
Genomic VariantsRPAP3  RPAP3 [DGVbeta]
snp3D : Map Gene to Disease79657
General knowledge
Homologs : HomoloGeneRPAP3
Homology/Alignments : Family Browser (UCSC)RPAP3
Phylogenetic Trees/Animal Genes : TreeFamRPAP3
Chemical/Protein Interactions : CTD79657
Chemical/Pharm GKB GenePA162401982
Clinical trialRPAP3
Cancer Resource (Charite)ENSG00000005175
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneRPAP3
iHOPRPAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:40:39 CEST 2013
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