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RPAP3 (RNA polymerase II associated protein 3)

Identity

Other names-
HGNC (Hugo) RPAP3
LocusID (NCBI) 79657
Atlas_Id 52136
Location 12q13.11
Location_base_pair Starts at 48055715 and ends at 48099844 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas)

Solid Tumors AmeloblastomID5945

External links

Nomenclature
HGNC (Hugo)RPAP3   26151
Cards
Entrez_Gene (NCBI)RPAP3  79657  RNA polymerase II associated protein 3
GeneCards (Weizmann)RPAP3
Ensembl hg19 (Hinxton)ENSG00000005175 [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000005175 [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
ICGC DataPortalENSG00000005175
TCGA cBioPortalRPAP3
AceView (NCBI)RPAP3
Genatlas (Paris)RPAP3
WikiGenes79657
SOURCE (Princeton)RPAP3
Genomic and cartography
GoldenPath hg19 (UCSC)RPAP3  -     chr12:48055715-48099844 -  12q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPAP3  -     12q13.11   [Description]    (hg38-Dec_2013)
EnsemblRPAP3 - 12q13.11 [CytoView hg19]  RPAP3 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIRPAP3 [Mapview hg19]  RPAP3 [Mapview hg38]
OMIM611477   
Gene and transcription
Genbank (Entrez)AK025561 AK299465 BC003680 BC056415 CA449693
RefSeq transcript (Entrez)NM_001146075 NM_001146076 NM_024604
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)RPAP3
Cluster EST : UnigeneHs.437855 [ NCBI ]
CGAP (NCI)Hs.437855
Alternative Splicing : Fast-db (Paris)GSHG0007406
Alternative Splicing GalleryENSG00000005175
Gene ExpressionRPAP3 [ NCBI-GEO ]     RPAP3 [ SEEK ]   RPAP3 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6T3 (Uniprot)
NextProtQ9H6T3  [Medical]
With graphics : InterProQ9H6T3
Splice isoforms : SwissVarQ9H6T3 (Swissvar)
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)RPAP3-like_C    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Related proteins : CluSTrQ9H6T3
Domain families : Pfam (Sanger)RPAP3_C (PF13877)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam13877    pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations79657
Blocks (Seattle)Q9H6T3
PDB (SRS)4CGV    4CGW   
PDB (PDBSum)4CGV    4CGW   
PDB (IMB)4CGV    4CGW   
PDB (RSDB)4CGV    4CGW   
Human Protein AtlasENSG00000005175
Peptide AtlasQ9H6T3
HPRD07970
IPIIPI00002408   IPI00448515   IPI00924947   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6T3
IntAct (EBI)Q9H6T3
FunCoupENSG00000005175
BioGRIDRPAP3
IntegromeDBRPAP3
STRING (EMBL)RPAP3
Ontologies - Pathways
QuickGOQ9H6T3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
Protein Interaction DatabaseRPAP3
DoCM (Curated mutations)RPAP3
Wikipedia pathwaysRPAP3
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerRPAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAP3
dbVarRPAP3
ClinVarRPAP3
1000_GenomesRPAP3 
Exome Variant ServerRPAP3
SNP (GeneSNP Utah)RPAP3
SNP : HGBaseRPAP3
Genetic variants : HAPMAPRPAP3
Genomic Variants (DGV)RPAP3 [DGVbeta]
Mutations
ICGC Data PortalRPAP3 
TCGA Data PortalRPAP3 
Tumor PortalRPAP3
Somatic Mutations in Cancer : COSMICRPAP3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:48055715-48099844
CONAN: Copy Number AnalysisRPAP3 
Mutations and Diseases : HGMDRPAP3
OMIM611477   
MedgenRPAP3
NextProtQ9H6T3 [Medical]
GENETestsRPAP3
Disease Genetic AssociationRPAP3
Huge Navigator RPAP3 [HugePedia]  RPAP3 [HugeCancerGEM]
snp3D : Map Gene to Disease79657
DGIdb (Drug Gene Interaction db)RPAP3
General knowledge
Homologs : HomoloGeneRPAP3
Homology/Alignments : Family Browser (UCSC)RPAP3
Phylogenetic Trees/Animal Genes : TreeFamRPAP3
Chemical/Protein Interactions : CTD79657
Chemical/Pharm GKB GenePA162401982
Clinical trialRPAP3
Cancer Resource (Charite)ENSG00000005175
Other databases
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
CoreMineRPAP3
GoPubMedRPAP3
iHOPRPAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 20 20:00:43 CEST 2015

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