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RPAP3 (RNA polymerase II associated protein 3)

Identity

HGNC (Hugo) RPAP3
LocusID (NCBI) 79657
Atlas_Id 52136
Location 12q13.11
Location_base_pair Starts at 48055715 and ends at 48099844 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
RPAP3 12q13.11 / ADAM32 8p11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas)
  Lung: Translocations in Small Cell Carcinoma

External links

Nomenclature
HGNC (Hugo)RPAP3   26151
Cards
Entrez_Gene (NCBI)RPAP3  79657  RNA polymerase II associated protein 3
GeneCards (Weizmann)RPAP3
Ensembl hg19 (Hinxton)ENSG00000005175 [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000005175 [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
ICGC DataPortalENSG00000005175
TCGA cBioPortalRPAP3
AceView (NCBI)RPAP3
Genatlas (Paris)RPAP3
WikiGenes79657
SOURCE (Princeton)RPAP3
Genomic and cartography
GoldenPath hg19 (UCSC)RPAP3  -     chr12:48055715-48099844 -  12q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPAP3  -     12q13.11   [Description]    (hg38-Dec_2013)
EnsemblRPAP3 - 12q13.11 [CytoView hg19]  RPAP3 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIRPAP3 [Mapview hg19]  RPAP3 [Mapview hg38]
OMIM611477   
Gene and transcription
Genbank (Entrez)AK025561 AK299465 BC003680 BC056415 CA449693
RefSeq transcript (Entrez)NM_001146075 NM_001146076 NM_024604
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)RPAP3
Cluster EST : UnigeneHs.437855 [ NCBI ]
CGAP (NCI)Hs.437855
Alternative Splicing : Fast-db (Paris)GSHG0007406
Alternative Splicing GalleryENSG00000005175
Gene ExpressionRPAP3 [ NCBI-GEO ]     RPAP3 [ SEEK ]   RPAP3 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)79657
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6T3 (Uniprot)
NextProtQ9H6T3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6T3
Splice isoforms : SwissVarQ9H6T3 (Swissvar)
PhosPhoSitePlusQ9H6T3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)RPAP3-like_C    TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)RPAP3_C (PF13877)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam13877    pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations79657
Blocks (Seattle)RPAP3
PDB (SRS)4CGV    4CGW   
PDB (PDBSum)4CGV    4CGW   
PDB (IMB)4CGV    4CGW   
PDB (RSDB)4CGV    4CGW   
Structural Biology KnowledgeBase4CGV    4CGW   
SCOP (Structural Classification of Proteins)4CGV    4CGW   
CATH (Classification of proteins structures)4CGV    4CGW   
Human Protein AtlasENSG00000005175
Peptide AtlasQ9H6T3
HPRD07970
IPIIPI00002408   IPI00448515   IPI00924947   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6T3
IntAct (EBI)Q9H6T3
FunCoupENSG00000005175
BioGRIDRPAP3
IntegromeDBRPAP3
STRING (EMBL)RPAP3
ZODIACRPAP3
Ontologies - Pathways
QuickGOQ9H6T3
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
Protein Interaction DatabaseRPAP3
Atlas of Cancer Signalling NetworkRPAP3
Wikipedia pathwaysRPAP3
Orthology - Evolution
OrthoDB79657
GeneTree (enSembl)ENSG00000005175
Phylogenetic Trees/Animal Genes : TreeFamRPAP3
Homologs : HomoloGeneRPAP3
Homology/Alignments : Family Browser (UCSC)RPAP3
Gene fusions - Rearrangements
Fusion: TCGARPAP3 12q13.11 ADAM32 8p11.22 LUSC
Polymorphisms : SNP, variants
NCBI Variation ViewerRPAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPAP3
dbVarRPAP3
ClinVarRPAP3
1000_GenomesRPAP3 
Exome Variant ServerRPAP3
Exome Aggregation Consortium (ExAC)ENSG00000005175
SNP (GeneSNP Utah)RPAP3
SNP : HGBaseRPAP3
Genetic variants : HAPMAPRPAP3
Genomic Variants (DGV)RPAP3 [DGVbeta]
Mutations
ICGC Data PortalRPAP3 
TCGA Data PortalRPAP3 
Tumor PortalRPAP3
TCGA Copy Number PortalRPAP3
Somatic Mutations in Cancer : COSMICRPAP3 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPAP3
DgiDB (Drug Gene Interaction Database)RPAP3
DoCM (Curated mutations)RPAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPAP3 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:48055715-48099844
CONAN: Copy Number AnalysisRPAP3 
Mutations and Diseases : HGMDRPAP3
OMIM611477   
MedgenRPAP3
NextProtQ9H6T3 [Medical]
TSGene79657
GENETestsRPAP3
Huge Navigator RPAP3 [HugePedia]  RPAP3 [HugeCancerGEM]
snp3D : Map Gene to Disease79657
BioCentury BCIQRPAP3
General knowledge
Chemical/Protein Interactions : CTD79657
Chemical/Pharm GKB GenePA162401982
Clinical trialRPAP3
Other databases
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPAP3
GoPubMedRPAP3
iHOPRPAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 19:25:20 CET 2016

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