Atlas of Genetics and Cytogenetics in Oncology and Haematology


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RPAP3 (RNA polymerase II associated protein 3)

Identity

Other names-
HGNC (Hugo) RPAP3
LocusID (NCBI) 79657
Location 12q13.11
Location_base_pair Starts at 48055715 and ends at 48099844 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)RPAP3   26151
Cards
Entrez_Gene (NCBI)RPAP3  79657  RNA polymerase II associated protein 3
GeneCards (Weizmann)RPAP3
Ensembl (Hinxton) [Gene_View]  chr12:48055715-48099844 [Contig_View]  RPAP3 [Vega]
cBioPortalRPAP3
AceView (NCBI)RPAP3
Genatlas (Paris)RPAP3
WikiGenes79657
SOURCE (Princeton)NM_001146075 NM_001146076 NM_024604
Genomic and cartography
GoldenPath (UCSC)RPAP3  -  12q13.11   chr12:48055715-48099844 -  12q13.11   [Description]    (hg19-Feb_2009)
EnsemblRPAP3 - 12q13.11 [CytoView]
Mapping of homologs : NCBIRPAP3 [Mapview]
OMIM611477   
Gene and transcription
Genbank (Entrez)AK025561 AK299465 BC003680 BC056415 CA449693
RefSeq transcript (Entrez)NM_001146075 NM_001146076 NM_024604
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004929384
Consensus coding sequences : CCDS (NCBI)RPAP3
Cluster EST : UnigeneHs.437855 [ NCBI ]
CGAP (NCI)Hs.437855
Alternative Splicing : Fast-db (Paris)GSHG0007406
Gene ExpressionRPAP3 [ NCBI-GEO ]     RPAP3 [ SEEK ]   RPAP3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6T3 (Uniprot)
NextProtQ9H6T3  [Medical]
With graphics : InterProQ9H6T3
Splice isoforms : SwissVarQ9H6T3 (Swissvar)
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)RPAP3-like_C [organisation]   TPR-contain_dom [organisation]   TPR-like_helical [organisation]   TPR_1 [organisation]   TPR_repeat [organisation]  
Related proteins : CluSTrQ9H6T3
Domain families : Pfam (Sanger)RPAP3_C (PF13877)    TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam13877    pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
DMDM Disease mutations79657
Blocks (Seattle)Q9H6T3
Peptide AtlasQ9H6T3
HPRD07970
IPIIPI00002408   IPI00448515   IPI00924947   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6T3
IntAct (EBI)Q9H6T3
BioGRIDRPAP3
InParanoidQ9H6T3
Interologous Interaction database Q9H6T3
IntegromeDBRPAP3
STRING (EMBL)RPAP3
Ontologies - Pathways
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
Protein Interaction DatabaseRPAP3
Wikipedia pathwaysRPAP3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPAP3
snp3D : Map Gene to Disease79657
SNP (GeneSNP Utah)RPAP3
SNP : HGBaseRPAP3
Genetic variants : HAPMAPRPAP3
Exome VariantRPAP3
1000_GenomesRPAP3 
Somatic Mutations in Cancer : COSMICRPAP3 
CONAN: Copy Number AnalysisRPAP3 
Mutations and Diseases : HGMDRPAP3
Mutations and Diseases : intOGenRPAP3
Genomic VariantsRPAP3  RPAP3 [DGVbeta]
dbVarRPAP3
ClinVarRPAP3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM611477   
MedgenRPAP3
GENETestsRPAP3
Disease Genetic AssociationRPAP3
Huge Navigator RPAP3 [HugePedia]  RPAP3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRPAP3
Homology/Alignments : Family Browser (UCSC)RPAP3
Phylogenetic Trees/Animal Genes : TreeFamRPAP3
Chemical/Protein Interactions : CTD79657
Chemical/Pharm GKB GenePA162401982
Clinical trialRPAP3
Other databases
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
CoreMineRPAP3
iHOPRPAP3
OncoSearchRPAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 19:15:47 CEST 2014

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