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RPE (ribulose-5-phosphate-3-epimerase)

Identity

Other aliasRPE2-1
HGNC (Hugo) RPE
LocusID (NCBI) 6120
Atlas_Id 72777
Location 2q34  [Link to chromosome band 2q34]
Location_base_pair Starts at 210002565 and ends at 210022260 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPE   10293
Cards
Entrez_Gene (NCBI)RPE  6120  ribulose-5-phosphate-3-epimerase
AliasesRPE2-1
GeneCards (Weizmann)RPE
Ensembl hg19 (Hinxton)ENSG00000197713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197713 [Gene_View]  chr2:210002565-210022260 [Contig_View]  RPE [Vega]
ICGC DataPortalENSG00000197713
TCGA cBioPortalRPE
AceView (NCBI)RPE
Genatlas (Paris)RPE
WikiGenes6120
SOURCE (Princeton)RPE
Genetics Home Reference (NIH)RPE
Genomic and cartography
GoldenPath hg38 (UCSC)RPE  -     chr2:210002565-210022260 +  2q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPE  -     2q34   [Description]    (hg19-Feb_2009)
EnsemblRPE - 2q34 [CytoView hg19]  RPE - 2q34 [CytoView hg38]
Mapping of homologs : NCBIRPE [Mapview hg19]  RPE [Mapview hg38]
OMIM180480   
Gene and transcription
Genbank (Entrez)AB075523 AI222711 AJ224326 AK055724 AK056028
RefSeq transcript (Entrez)NM_001278282 NM_001278283 NM_001278285 NM_001278286 NM_001278288 NM_001278289 NM_001318926 NM_001318927 NM_001318928 NM_001318929 NM_001318930 NM_001318931 NM_006916 NM_199229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPE
Cluster EST : UnigeneHs.734255 [ NCBI ]
CGAP (NCI)Hs.734255
Alternative Splicing GalleryENSG00000197713
Gene ExpressionRPE [ NCBI-GEO ]   RPE [ EBI - ARRAY_EXPRESS ]   RPE [ SEEK ]   RPE [ MEM ]
Gene Expression Viewer (FireBrowse)RPE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6120
GTEX Portal (Tissue expression)RPE
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96AT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96AT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96AT9
Splice isoforms : SwissVarQ96AT9
Catalytic activity : Enzyme5.1.3.1 [ Enzyme-Expasy ]   5.1.3.15.1.3.1 [ IntEnz-EBI ]   5.1.3.1 [ BRENDA ]   5.1.3.1 [ KEGG ]   
PhosPhoSitePlusQ96AT9
Domaine pattern : Prosite (Expaxy)RIBUL_P_3_EPIMER_1 (PS01085)    RIBUL_P_3_EPIMER_2 (PS01086)   
Domains : Interpro (EBI)Aldolase_TIM    Ribul_P_3_epim    Ribul_P_3_epim-like    RibuloseP-bd_barrel   
Domain families : Pfam (Sanger)Ribul_P_3_epim (PF00834)   
Domain families : Pfam (NCBI)pfam00834   
Conserved Domain (NCBI)RPE
DMDM Disease mutations6120
Blocks (Seattle)RPE
PDB (SRS)3OVP    3OVQ    3OVR    3QC3   
PDB (PDBSum)3OVP    3OVQ    3OVR    3QC3   
PDB (IMB)3OVP    3OVQ    3OVR    3QC3   
PDB (RSDB)3OVP    3OVQ    3OVR    3QC3   
Structural Biology KnowledgeBase3OVP    3OVQ    3OVR    3QC3   
SCOP (Structural Classification of Proteins)3OVP    3OVQ    3OVR    3QC3   
CATH (Classification of proteins structures)3OVP    3OVQ    3OVR    3QC3   
SuperfamilyQ96AT9
Human Protein AtlasENSG00000197713
Peptide AtlasQ96AT9
HPRD01608
IPIIPI00335280   IPI00373788   IPI00910461   IPI00983692   IPI00185258   IPI00939663   IPI00927031   IPI00927218   IPI00927442   IPI00927626   IPI00914882   IPI00924782   IPI00926040   IPI00925376   IPI00926433   IPI00925812   
Protein Interaction databases
DIP (DOE-UCLA)Q96AT9
IntAct (EBI)Q96AT9
FunCoupENSG00000197713
BioGRIDRPE
STRING (EMBL)RPE
ZODIACRPE
Ontologies - Pathways
QuickGOQ96AT9
Ontology : AmiGOribulose-phosphate 3-epimerase activity  ribulose-phosphate 3-epimerase activity  cytosol  cytosol  carbohydrate metabolic process  pentose-phosphate shunt  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  identical protein binding  protein homodimerization activity  cellular carbohydrate metabolic process  metal ion binding  extracellular exosome  
Ontology : EGO-EBIribulose-phosphate 3-epimerase activity  ribulose-phosphate 3-epimerase activity  cytosol  cytosol  carbohydrate metabolic process  pentose-phosphate shunt  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  identical protein binding  protein homodimerization activity  cellular carbohydrate metabolic process  metal ion binding  extracellular exosome  
Pathways : KEGGPentose phosphate pathway    Pentose and glucuronate interconversions   
NDEx NetworkRPE
Atlas of Cancer Signalling NetworkRPE
Wikipedia pathwaysRPE
Orthology - Evolution
OrthoDB6120
GeneTree (enSembl)ENSG00000197713
Phylogenetic Trees/Animal Genes : TreeFamRPE
HOVERGENQ96AT9
HOGENOMQ96AT9
Homologs : HomoloGeneRPE
Homology/Alignments : Family Browser (UCSC)RPE
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPE
dbVarRPE
ClinVarRPE
1000_GenomesRPE 
Exome Variant ServerRPE
ExAC (Exome Aggregation Consortium)RPE (select the gene name)
Genetic variants : HAPMAP6120
Genomic Variants (DGV)RPE [DGVbeta]
DECIPHERRPE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPE 
Mutations
ICGC Data PortalRPE 
TCGA Data PortalRPE 
Broad Tumor PortalRPE
OASIS PortalRPE [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPE  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPE
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPE
DgiDB (Drug Gene Interaction Database)RPE
DoCM (Curated mutations)RPE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPE (select a term)
intoGenRPE
Cancer3DRPE(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180480   
Orphanet
MedgenRPE
Genetic Testing Registry RPE
NextProtQ96AT9 [Medical]
TSGene6120
GENETestsRPE
Target ValidationRPE
Huge Navigator RPE [HugePedia]
snp3D : Map Gene to Disease6120
BioCentury BCIQRPE
ClinGenRPE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6120
Chemical/Pharm GKB GenePA34654
Clinical trialRPE
Miscellaneous
canSAR (ICR)RPE (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPE
EVEXRPE
GoPubMedRPE
iHOPRPE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:10 CEST 2017

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