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RPEL1 (ribulose-5-phosphate-3-epimerase like 1)

Identity

Alias (NCBI)-
HGNC (Hugo) RPEL1
LocusID (NCBI) 729020
Atlas_Id 72779
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103245887 and ends at 103248016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPEL1   45241
Cards
Entrez_Gene (NCBI)RPEL1    ribulose-5-phosphate-3-epimerase like 1
Aliases
GeneCards (Weizmann)RPEL1
Ensembl hg19 (Hinxton)ENSG00000235376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235376 [Gene_View]  ENSG00000235376 [Sequence]  chr10:103245887-103248016 [Contig_View]  RPEL1 [Vega]
ICGC DataPortalENSG00000235376
TCGA cBioPortalRPEL1
AceView (NCBI)RPEL1
Genatlas (Paris)RPEL1
SOURCE (Princeton)RPEL1
Genetics Home Reference (NIH)RPEL1
Genomic and cartography
GoldenPath hg38 (UCSC)RPEL1  -     chr10:103245887-103248016 +  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPEL1  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathRPEL1 - 10q24.33 [CytoView hg19]  RPEL1 - 10q24.33 [CytoView hg38]
ImmunoBaseENSG00000235376
Genome Data Viewer NCBIRPEL1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC137242 BC137243 BC157829 BC157875 BC171806
RefSeq transcript (Entrez)NM_001143909
Consensus coding sequences : CCDS (NCBI)RPEL1
Gene ExpressionRPEL1 [ NCBI-GEO ]   RPEL1 [ EBI - ARRAY_EXPRESS ]   RPEL1 [ SEEK ]   RPEL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPEL1 [ Firebrowse - Broad ]
GenevisibleExpression of RPEL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729020
GTEX Portal (Tissue expression)RPEL1
Human Protein AtlasENSG00000235376-RPEL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2QD12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2QD12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2QD12
PhosPhoSitePlusQ2QD12
Domaine pattern : Prosite (Expaxy)RIBUL_P_3_EPIMER_1 (PS01085)   
Domains : Interpro (EBI)Aldolase_TIM    Ribul_P_3_epim    Ribul_P_3_epim-like    RibuloseP-bd_barrel   
Domain families : Pfam (Sanger)Ribul_P_3_epim (PF00834)   
Domain families : Pfam (NCBI)pfam00834   
Conserved Domain (NCBI)RPEL1
SuperfamilyQ2QD12
AlphaFold pdb e-kbQ2QD12   
Human Protein Atlas [tissue]ENSG00000235376-RPEL1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q2QD12
IntAct (EBI)Q2QD12
BioGRIDRPEL1
STRING (EMBL)RPEL1
ZODIACRPEL1
Ontologies - Pathways
QuickGOQ2QD12
Ontology : AmiGOribulose-phosphate 3-epimerase activity  cytosol  cytosol  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  cellular carbohydrate metabolic process  metal ion binding  
Ontology : EGO-EBIribulose-phosphate 3-epimerase activity  cytosol  cytosol  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  cellular carbohydrate metabolic process  metal ion binding  
NDEx NetworkRPEL1
Atlas of Cancer Signalling NetworkRPEL1
Wikipedia pathwaysRPEL1
Orthology - Evolution
OrthoDB729020
GeneTree (enSembl)ENSG00000235376
Phylogenetic Trees/Animal Genes : TreeFamRPEL1
Homologs : HomoloGeneRPEL1
Homology/Alignments : Family Browser (UCSC)RPEL1
Gene fusions - Rearrangements
Fusion : QuiverRPEL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPEL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPEL1
dbVarRPEL1
ClinVarRPEL1
MonarchRPEL1
1000_GenomesRPEL1 
Exome Variant ServerRPEL1
GNOMAD BrowserENSG00000235376
Varsome BrowserRPEL1
ACMGRPEL1 variants
VarityQ2QD12
Genomic Variants (DGV)RPEL1 [DGVbeta]
DECIPHERRPEL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPEL1 
Mutations
ICGC Data PortalRPEL1 
TCGA Data PortalRPEL1 
Broad Tumor PortalRPEL1
OASIS PortalRPEL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPEL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPEL1
Mutations and Diseases : HGMDRPEL1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPEL1
DgiDB (Drug Gene Interaction Database)RPEL1
DoCM (Curated mutations)RPEL1
CIViC (Clinical Interpretations of Variants in Cancer)RPEL1
Cancer3DRPEL1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPEL1
MedgenRPEL1
Genetic Testing Registry RPEL1
NextProtQ2QD12 [Medical]
GENETestsRPEL1
Target ValidationRPEL1
Huge Navigator RPEL1 [HugePedia]
ClinGenRPEL1
Clinical trials, drugs, therapy
MyCancerGenomeRPEL1
Protein Interactions : CTDRPEL1
Pharm GKB GenePA166123732
PharosQ2QD12
Clinical trialRPEL1
Miscellaneous
canSAR (ICR)RPEL1
HarmonizomeRPEL1
DataMed IndexRPEL1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPEL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:06 CEST 2021

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