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RPEL1 (ribulose-5-phosphate-3-epimerase like 1)

Identity

Other alias-
HGNC (Hugo) RPEL1
LocusID (NCBI) 729020
Atlas_Id 72779
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103245887 and ends at 103248016 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPEL1   45241
Cards
Entrez_Gene (NCBI)RPEL1  729020  ribulose-5-phosphate-3-epimerase like 1
Aliases
GeneCards (Weizmann)RPEL1
Ensembl hg19 (Hinxton)ENSG00000235376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235376 [Gene_View]  chr10:103245887-103248016 [Contig_View]  RPEL1 [Vega]
ICGC DataPortalENSG00000235376
TCGA cBioPortalRPEL1
AceView (NCBI)RPEL1
Genatlas (Paris)RPEL1
WikiGenes729020
SOURCE (Princeton)RPEL1
Genetics Home Reference (NIH)RPEL1
Genomic and cartography
GoldenPath hg38 (UCSC)RPEL1  -     chr10:103245887-103248016 +  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPEL1  -     10q24.33   [Description]    (hg19-Feb_2009)
EnsemblRPEL1 - 10q24.33 [CytoView hg19]  RPEL1 - 10q24.33 [CytoView hg38]
Mapping of homologs : NCBIRPEL1 [Mapview hg19]  RPEL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137242 BC137243 BC157829 BC157875 BC171806
RefSeq transcript (Entrez)NM_001143909
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPEL1
Cluster EST : UnigeneHs.458437 [ NCBI ]
CGAP (NCI)Hs.458437
Alternative Splicing GalleryENSG00000235376
Gene ExpressionRPEL1 [ NCBI-GEO ]   RPEL1 [ EBI - ARRAY_EXPRESS ]   RPEL1 [ SEEK ]   RPEL1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPEL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729020
GTEX Portal (Tissue expression)RPEL1
Human Protein AtlasENSG00000235376-RPEL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2QD12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2QD12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2QD12
Splice isoforms : SwissVarQ2QD12
Catalytic activity : Enzyme5.1.3.1 [ Enzyme-Expasy ]   5.1.3.15.1.3.1 [ IntEnz-EBI ]   5.1.3.1 [ BRENDA ]   5.1.3.1 [ KEGG ]   
PhosPhoSitePlusQ2QD12
Domaine pattern : Prosite (Expaxy)RIBUL_P_3_EPIMER_1 (PS01085)   
Domains : Interpro (EBI)Aldolase_TIM    Ribul_P_3_epim    Ribul_P_3_epim-like    RibuloseP-bd_barrel   
Domain families : Pfam (Sanger)Ribul_P_3_epim (PF00834)   
Domain families : Pfam (NCBI)pfam00834   
Conserved Domain (NCBI)RPEL1
DMDM Disease mutations729020
Blocks (Seattle)RPEL1
SuperfamilyQ2QD12
Human Protein Atlas [tissue]ENSG00000235376-RPEL1 [tissue]
Peptide AtlasQ2QD12
Protein Interaction databases
DIP (DOE-UCLA)Q2QD12
IntAct (EBI)Q2QD12
FunCoupENSG00000235376
BioGRIDRPEL1
STRING (EMBL)RPEL1
ZODIACRPEL1
Ontologies - Pathways
QuickGOQ2QD12
Ontology : AmiGOribulose-phosphate 3-epimerase activity  cytosol  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  cellular carbohydrate metabolic process  metal ion binding  
Ontology : EGO-EBIribulose-phosphate 3-epimerase activity  cytosol  pentose-phosphate shunt, non-oxidative branch  pentose catabolic process  cellular carbohydrate metabolic process  metal ion binding  
NDEx NetworkRPEL1
Atlas of Cancer Signalling NetworkRPEL1
Wikipedia pathwaysRPEL1
Orthology - Evolution
OrthoDB729020
GeneTree (enSembl)ENSG00000235376
Phylogenetic Trees/Animal Genes : TreeFamRPEL1
HOVERGENQ2QD12
HOGENOMQ2QD12
Homologs : HomoloGeneRPEL1
Homology/Alignments : Family Browser (UCSC)RPEL1
Gene fusions - Rearrangements
Tumor Fusion PortalRPEL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPEL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPEL1
dbVarRPEL1
ClinVarRPEL1
1000_GenomesRPEL1 
Exome Variant ServerRPEL1
ExAC (Exome Aggregation Consortium)ENSG00000235376
GNOMAD BrowserENSG00000235376
Genetic variants : HAPMAP729020
Genomic Variants (DGV)RPEL1 [DGVbeta]
DECIPHERRPEL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPEL1 
Mutations
ICGC Data PortalRPEL1 
TCGA Data PortalRPEL1 
Broad Tumor PortalRPEL1
OASIS PortalRPEL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPEL1
BioMutasearch RPEL1
DgiDB (Drug Gene Interaction Database)RPEL1
DoCM (Curated mutations)RPEL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPEL1 (select a term)
intoGenRPEL1
Cancer3DRPEL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPEL1
MedgenRPEL1
Genetic Testing Registry RPEL1
NextProtQ2QD12 [Medical]
TSGene729020
GENETestsRPEL1
Target ValidationRPEL1
Huge Navigator RPEL1 [HugePedia]
snp3D : Map Gene to Disease729020
BioCentury BCIQRPEL1
ClinGenRPEL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729020
Chemical/Pharm GKB GenePA166123732
Clinical trialRPEL1
Miscellaneous
canSAR (ICR)RPEL1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPEL1
EVEXRPEL1
GoPubMedRPEL1
iHOPRPEL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:10:27 CET 2017

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