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RPF1 (ribosome production factor 1 homolog (S. cerevisiae))

Identity

Alias_namesBXDC5
brix domain containing 5
ribosome production factor 1 homolog (S. cerevisiae)
Other alias
HGNC (Hugo) RPF1
LocusID (NCBI) 80135
Atlas_Id 72780
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 84944920 and ends at 84964033 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GGA2 (16p12.2) / RPF1 (1p22.3)RPF1 (1p22.3) / GNG5 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPF1   30350
Cards
Entrez_Gene (NCBI)RPF1  80135  ribosome production factor 1 homolog (S. cerevisiae)
AliasesBXDC5
GeneCards (Weizmann)RPF1
Ensembl hg19 (Hinxton) [Gene_View]  chr1:84944920-84964033 [Contig_View]  RPF1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:84944920-84964033 [Contig_View]  RPF1 [Vega]
TCGA cBioPortalRPF1
AceView (NCBI)RPF1
Genatlas (Paris)RPF1
WikiGenes80135
SOURCE (Princeton)RPF1
Genetics Home Reference (NIH)RPF1
Genomic and cartography
GoldenPath hg19 (UCSC)RPF1  -     chr1:84944920-84964033 +  1p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPF1  -     1p22.3   [Description]    (hg38-Dec_2013)
EnsemblRPF1 - 1p22.3 [CytoView hg19]  RPF1 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBIRPF1 [Mapview hg19]  RPF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA761809 AF322053 AK022537 AL359584 BC016051
RefSeq transcript (Entrez)NM_025065
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)RPF1
Cluster EST : UnigeneHs.481202 [ NCBI ]
CGAP (NCI)Hs.481202
Gene ExpressionRPF1 [ NCBI-GEO ]   RPF1 [ EBI - ARRAY_EXPRESS ]   RPF1 [ SEEK ]   RPF1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80135
GTEX Portal (Tissue expression)RPF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H9Y2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H9Y2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H9Y2
Splice isoforms : SwissVarQ9H9Y2
PhosPhoSitePlusQ9H9Y2
Domaine pattern : Prosite (Expaxy)BRIX (PS50833)   
Domains : Interpro (EBI)Anticodon-bd    Brix   
Domain families : Pfam (Sanger)Brix (PF04427)   
Domain families : Pfam (NCBI)pfam04427   
Domain families : Smart (EMBL)Brix (SM00879)  
Conserved Domain (NCBI)RPF1
DMDM Disease mutations80135
Blocks (Seattle)RPF1
SuperfamilyQ9H9Y2
Peptide AtlasQ9H9Y2
HPRD15272
IPIIPI00292221   IPI00640449   
Protein Interaction databases
DIP (DOE-UCLA)Q9H9Y2
IntAct (EBI)Q9H9Y2
BioGRIDRPF1
STRING (EMBL)RPF1
ZODIACRPF1
Ontologies - Pathways
QuickGOQ9H9Y2
Ontology : AmiGOribosomal large subunit assembly  maturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  protein binding  nucleolus  preribosome, large subunit precursor  rRNA primary transcript binding  poly(A) RNA binding  
Ontology : EGO-EBIribosomal large subunit assembly  maturation of 5.8S rRNA  maturation of LSU-rRNA  RNA binding  protein binding  nucleolus  preribosome, large subunit precursor  rRNA primary transcript binding  poly(A) RNA binding  
NDEx NetworkRPF1
Atlas of Cancer Signalling NetworkRPF1
Wikipedia pathwaysRPF1
Orthology - Evolution
OrthoDB80135
Phylogenetic Trees/Animal Genes : TreeFamRPF1
HOVERGENQ9H9Y2
HOGENOMQ9H9Y2
Homologs : HomoloGeneRPF1
Homology/Alignments : Family Browser (UCSC)RPF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPF1
dbVarRPF1
ClinVarRPF1
1000_GenomesRPF1 
Exome Variant ServerRPF1
ExAC (Exome Aggregation Consortium)RPF1 (select the gene name)
Genetic variants : HAPMAP80135
Genomic Variants (DGV)RPF1 [DGVbeta]
DECIPHER (Syndromes)1:84944920-84964033  
CONAN: Copy Number AnalysisRPF1 
Mutations
ICGC Data PortalRPF1 
TCGA Data PortalRPF1 
Broad Tumor PortalRPF1
OASIS PortalRPF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPF1
DgiDB (Drug Gene Interaction Database)RPF1
DoCM (Curated mutations)RPF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPF1 (select a term)
intoGenRPF1
Cancer3DRPF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPF1
Genetic Testing Registry RPF1
NextProtQ9H9Y2 [Medical]
TSGene80135
GENETestsRPF1
Huge Navigator RPF1 [HugePedia]
snp3D : Map Gene to Disease80135
BioCentury BCIQRPF1
ClinGenRPF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80135
Chemical/Pharm GKB GenePA165752348
Clinical trialRPF1
Miscellaneous
canSAR (ICR)RPF1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPF1
EVEXRPF1
GoPubMedRPF1
iHOPRPF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:35 CET 2017

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