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RPF2 (ribosome production factor 2 homolog)

Identity

Alias (NCBI)BXDC1
bA397G5.4
HGNC (Hugo) RPF2
HGNC Alias symbFLJ21087
bA397G5.4
HGNC Alias nameribosomal processing factor 2 homolog (S. cerevisiae)
HGNC Previous nameBXDC1
HGNC Previous namebrix domain containing 1
 ribosome production factor 2 homolog (S. cerevisiae)
LocusID (NCBI) 84154
Atlas_Id 72781
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 110982017 and ends at 111028263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPF2 (6q21) / GTF3C6 (6q21)RPF2 (6q21) / RPF2 (6q21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPF2   20870
Cards
Entrez_Gene (NCBI)RPF2  84154  ribosome production factor 2 homolog
AliasesBXDC1; bA397G5.4
GeneCards (Weizmann)RPF2
Ensembl hg19 (Hinxton)ENSG00000197498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197498 [Gene_View]  ENSG00000197498 [Sequence]  chr6:110982017-111028263 [Contig_View]  RPF2 [Vega]
ICGC DataPortalENSG00000197498
TCGA cBioPortalRPF2
AceView (NCBI)RPF2
Genatlas (Paris)RPF2
WikiGenes84154
SOURCE (Princeton)RPF2
Genetics Home Reference (NIH)RPF2
Genomic and cartography
GoldenPath hg38 (UCSC)RPF2  -     chr6:110982017-111028263 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPF2  -     6q21   [Description]    (hg19-Feb_2009)
GoldenPathRPF2 - 6q21 [CytoView hg19]  RPF2 - 6q21 [CytoView hg38]
ImmunoBaseENSG00000197498
genome Data Viewer NCBIRPF2 [Mapview hg19]  
OMIM618471   
Gene and transcription
Genbank (Entrez)AK024740 AK056264 AK292165 AK301662 AL833613
RefSeq transcript (Entrez)NM_001289111 NM_032194
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPF2
Alternative Splicing GalleryENSG00000197498
Gene ExpressionRPF2 [ NCBI-GEO ]   RPF2 [ EBI - ARRAY_EXPRESS ]   RPF2 [ SEEK ]   RPF2 [ MEM ]
Gene Expression Viewer (FireBrowse)RPF2 [ Firebrowse - Broad ]
GenevisibleExpression of RPF2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84154
GTEX Portal (Tissue expression)RPF2
Human Protein AtlasENSG00000197498-RPF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7B2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7B2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7B2
Splice isoforms : SwissVarQ9H7B2
PhosPhoSitePlusQ9H7B2
Domaine pattern : Prosite (Expaxy)BRIX (PS50833)   
Domains : Interpro (EBI)Brix    Rpf2   
Domain families : Pfam (Sanger)Brix (PF04427)   
Domain families : Pfam (NCBI)pfam04427   
Domain families : Smart (EMBL)Brix (SM00879)  
Conserved Domain (NCBI)RPF2
DMDM Disease mutations84154
Blocks (Seattle)RPF2
SuperfamilyQ9H7B2
Human Protein Atlas [tissue]ENSG00000197498-RPF2 [tissue]
Peptide AtlasQ9H7B2
HPRD12552
IPIIPI00396329   IPI00478298   IPI00644504   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7B2
IntAct (EBI)Q9H7B2
FunCoupENSG00000197498
BioGRIDRPF2
STRING (EMBL)RPF2
ZODIACRPF2
Ontologies - Pathways
QuickGOQ9H7B2
Ontology : AmiGOribosomal large subunit assembly  maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  5S rRNA binding  rRNA binding  ribosomal large subunit biogenesis  regulation of signal transduction by p53 class mediator  protein localization to nucleolus  
Ontology : EGO-EBIribosomal large subunit assembly  maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  RNA binding  protein binding  nucleoplasm  nucleolus  nucleolus  5S rRNA binding  rRNA binding  ribosomal large subunit biogenesis  regulation of signal transduction by p53 class mediator  protein localization to nucleolus  
NDEx NetworkRPF2
Atlas of Cancer Signalling NetworkRPF2
Wikipedia pathwaysRPF2
Orthology - Evolution
OrthoDB84154
GeneTree (enSembl)ENSG00000197498
Phylogenetic Trees/Animal Genes : TreeFamRPF2
HOGENOMQ9H7B2
Homologs : HomoloGeneRPF2
Homology/Alignments : Family Browser (UCSC)RPF2
Gene fusions - Rearrangements
Fusion : QuiverRPF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPF2
dbVarRPF2
ClinVarRPF2
1000_GenomesRPF2 
Exome Variant ServerRPF2
GNOMAD BrowserENSG00000197498
Varsome BrowserRPF2
Genetic variants : HAPMAP84154
Genomic Variants (DGV)RPF2 [DGVbeta]
DECIPHERRPF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPF2 
Mutations
ICGC Data PortalRPF2 
TCGA Data PortalRPF2 
Broad Tumor PortalRPF2
OASIS PortalRPF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPF2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPF2
Mutations and Diseases : HGMDRPF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPF2
DgiDB (Drug Gene Interaction Database)RPF2
DoCM (Curated mutations)RPF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPF2 (select a term)
intoGenRPF2
Cancer3DRPF2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618471   
Orphanet
DisGeNETRPF2
MedgenRPF2
Genetic Testing Registry RPF2
NextProtQ9H7B2 [Medical]
TSGene84154
GENETestsRPF2
Target ValidationRPF2
Huge Navigator RPF2 [HugePedia]
snp3D : Map Gene to Disease84154
BioCentury BCIQRPF2
ClinGenRPF2
Clinical trials, drugs, therapy
Protein Interactions : CTD84154
Pharm GKB GenePA165618192
Clinical trialRPF2
Miscellaneous
canSAR (ICR)RPF2 (select the gene name)
HarmonizomeRPF2
DataMed IndexRPF2
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPF2
EVEXRPF2
GoPubMedRPF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:33:19 CEST 2020

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