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RPIA (ribose 5-phosphate isomerase A)

Identity

Other aliasRPI
RPIAD
HGNC (Hugo) RPIA
LocusID (NCBI) 22934
Atlas_Id 55339
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 88691658 and ends at 88750935 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPIA   10297
Cards
Entrez_Gene (NCBI)RPIA  22934  ribose 5-phosphate isomerase A
AliasesRPI; RPIAD
GeneCards (Weizmann)RPIA
Ensembl hg19 (Hinxton)ENSG00000153574 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153574 [Gene_View]  chr2:88691658-88750935 [Contig_View]  RPIA [Vega]
ICGC DataPortalENSG00000153574
TCGA cBioPortalRPIA
AceView (NCBI)RPIA
Genatlas (Paris)RPIA
WikiGenes22934
SOURCE (Princeton)RPIA
Genetics Home Reference (NIH)RPIA
Genomic and cartography
GoldenPath hg38 (UCSC)RPIA  -     chr2:88691658-88750935 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPIA  -     2p11.2   [Description]    (hg19-Feb_2009)
EnsemblRPIA - 2p11.2 [CytoView hg19]  RPIA - 2p11.2 [CytoView hg38]
Mapping of homologs : NCBIRPIA [Mapview hg19]  RPIA [Mapview hg38]
OMIM180430   608611   
Gene and transcription
Genbank (Entrez)AY050633 BC015529 BF063086 CB989690 L35035
RefSeq transcript (Entrez)NM_144563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPIA
Cluster EST : UnigeneHs.469264 [ NCBI ]
CGAP (NCI)Hs.469264
Alternative Splicing GalleryENSG00000153574
Gene ExpressionRPIA [ NCBI-GEO ]   RPIA [ EBI - ARRAY_EXPRESS ]   RPIA [ SEEK ]   RPIA [ MEM ]
Gene Expression Viewer (FireBrowse)RPIA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22934
GTEX Portal (Tissue expression)RPIA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49247   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49247  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49247
Splice isoforms : SwissVarP49247
Catalytic activity : Enzyme5.3.1.6 [ Enzyme-Expasy ]   5.3.1.65.3.1.6 [ IntEnz-EBI ]   5.3.1.6 [ BRENDA ]   5.3.1.6 [ KEGG ]   
PhosPhoSitePlusP49247
Domains : Interpro (EBI)Ribose5P_isomerase_typA    Ribose5P_isomerase_typA_subgr   
Domain families : Pfam (Sanger)Rib_5-P_isom_A (PF06026)   
Domain families : Pfam (NCBI)pfam06026   
Conserved Domain (NCBI)RPIA
DMDM Disease mutations22934
Blocks (Seattle)RPIA
SuperfamilyP49247
Human Protein AtlasENSG00000153574
Peptide AtlasP49247
HPRD01589
IPIIPI00026513   IPI01012899   
Protein Interaction databases
DIP (DOE-UCLA)P49247
IntAct (EBI)P49247
FunCoupENSG00000153574
BioGRIDRPIA
STRING (EMBL)RPIA
ZODIACRPIA
Ontologies - Pathways
QuickGOP49247
Ontology : AmiGOribose-5-phosphate isomerase activity  ribose-5-phosphate isomerase activity  ribose-5-phosphate isomerase activity  protein binding  cytosol  cytosol  D-ribose metabolic process  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  identical protein binding  intracellular membrane-bounded organelle  monosaccharide binding  
Ontology : EGO-EBIribose-5-phosphate isomerase activity  ribose-5-phosphate isomerase activity  ribose-5-phosphate isomerase activity  protein binding  cytosol  cytosol  D-ribose metabolic process  pentose-phosphate shunt  pentose-phosphate shunt, non-oxidative branch  identical protein binding  intracellular membrane-bounded organelle  monosaccharide binding  
Pathways : KEGGPentose phosphate pathway   
NDEx NetworkRPIA
Atlas of Cancer Signalling NetworkRPIA
Wikipedia pathwaysRPIA
Orthology - Evolution
OrthoDB22934
GeneTree (enSembl)ENSG00000153574
Phylogenetic Trees/Animal Genes : TreeFamRPIA
HOVERGENP49247
HOGENOMP49247
Homologs : HomoloGeneRPIA
Homology/Alignments : Family Browser (UCSC)RPIA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPIA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPIA
dbVarRPIA
ClinVarRPIA
1000_GenomesRPIA 
Exome Variant ServerRPIA
ExAC (Exome Aggregation Consortium)RPIA (select the gene name)
Genetic variants : HAPMAP22934
Genomic Variants (DGV)RPIA [DGVbeta]
DECIPHERRPIA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPIA 
Mutations
ICGC Data PortalRPIA 
TCGA Data PortalRPIA 
Broad Tumor PortalRPIA
OASIS PortalRPIA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPIA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPIA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPIA
DgiDB (Drug Gene Interaction Database)RPIA
DoCM (Curated mutations)RPIA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPIA (select a term)
intoGenRPIA
Cancer3DRPIA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180430    608611   
Orphanet23411   
MedgenRPIA
Genetic Testing Registry RPIA
NextProtP49247 [Medical]
TSGene22934
GENETestsRPIA
Huge Navigator RPIA [HugePedia]
snp3D : Map Gene to Disease22934
BioCentury BCIQRPIA
ClinGenRPIA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22934
Chemical/Pharm GKB GenePA34659
Clinical trialRPIA
Miscellaneous
canSAR (ICR)RPIA (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPIA
EVEXRPIA
GoPubMedRPIA
iHOPRPIA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:29 CEST 2017

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