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RPL10A (ribosomal protein L10a)

Identity

Alias_namesNEDD6
Alias_symbol (synonym)Csa-19
L10A
Other aliasCSA19
HGNC (Hugo) RPL10A
LocusID (NCBI) 4736
Atlas_Id 46376
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35468401 and ends at 35470781 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPL10A (6p21.31) / DPP9 (19p13.3)RPL10A (6p21.31) / FAM166B (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL10A   10299
Cards
Entrez_Gene (NCBI)RPL10A  4736  ribosomal protein L10a
AliasesCSA19; Csa-19; L10A; NEDD6
GeneCards (Weizmann)RPL10A
Ensembl hg19 (Hinxton)ENSG00000198755 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198755 [Gene_View]  chr6:35468401-35470781 [Contig_View]  RPL10A [Vega]
ICGC DataPortalENSG00000198755
TCGA cBioPortalRPL10A
AceView (NCBI)RPL10A
Genatlas (Paris)RPL10A
WikiGenes4736
SOURCE (Princeton)RPL10A
Genetics Home Reference (NIH)RPL10A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL10A  -     chr6:35468401-35470781 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL10A  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblRPL10A - 6p21.31 [CytoView hg19]  RPL10A - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIRPL10A [Mapview hg19]  RPL10A [Mapview hg38]
OMIM615660   
Gene and transcription
Genbank (Entrez)AB082926 AF086557 AK092386 AK313181 BC006791
RefSeq transcript (Entrez)NM_007104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL10A
Cluster EST : UnigeneHs.546269 [ NCBI ]
CGAP (NCI)Hs.546269
Alternative Splicing GalleryENSG00000198755
Gene ExpressionRPL10A [ NCBI-GEO ]   RPL10A [ EBI - ARRAY_EXPRESS ]   RPL10A [ SEEK ]   RPL10A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4736
GTEX Portal (Tissue expression)RPL10A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62906   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62906  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62906
Splice isoforms : SwissVarP62906
PhosPhoSitePlusP62906
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L1 (PS01199)   
Domains : Interpro (EBI)Ribosomal_L1    Ribosomal_L1-like    Ribosomal_L1/biogenesis    Ribosomal_L1_2-a/b-sand    Ribosomal_L1_3-a/b-sand    Ribosomal_L1_CS   
Domain families : Pfam (Sanger)Ribosomal_L1 (PF00687)   
Domain families : Pfam (NCBI)pfam00687   
Conserved Domain (NCBI)RPL10A
DMDM Disease mutations4736
Blocks (Seattle)RPL10A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP62906
Human Protein AtlasENSG00000198755
Peptide AtlasP62906
HPRD10199
IPIIPI00412579   
Protein Interaction databases
DIP (DOE-UCLA)P62906
IntAct (EBI)P62906
FunCoupENSG00000198755
BioGRIDRPL10A
STRING (EMBL)RPL10A
ZODIACRPL10A
Ontologies - Pathways
QuickGOP62906
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  response to ethanol  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  response to ethanol  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL10A
Atlas of Cancer Signalling NetworkRPL10A
Wikipedia pathwaysRPL10A
Orthology - Evolution
OrthoDB4736
GeneTree (enSembl)ENSG00000198755
Phylogenetic Trees/Animal Genes : TreeFamRPL10A
HOVERGENP62906
HOGENOMP62906
Homologs : HomoloGeneRPL10A
Homology/Alignments : Family Browser (UCSC)RPL10A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL10A [6p21.31]  -  FAM166B [9p13.3]  [FUSC001062]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL10A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL10A
dbVarRPL10A
ClinVarRPL10A
1000_GenomesRPL10A 
Exome Variant ServerRPL10A
ExAC (Exome Aggregation Consortium)RPL10A (select the gene name)
Genetic variants : HAPMAP4736
Genomic Variants (DGV)RPL10A [DGVbeta]
DECIPHERRPL10A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL10A 
Mutations
ICGC Data PortalRPL10A 
TCGA Data PortalRPL10A 
Broad Tumor PortalRPL10A
OASIS PortalRPL10A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL10A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL10A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RPL10A
DgiDB (Drug Gene Interaction Database)RPL10A
DoCM (Curated mutations)RPL10A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL10A (select a term)
intoGenRPL10A
Cancer3DRPL10A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615660   
Orphanet
MedgenRPL10A
Genetic Testing Registry RPL10A
NextProtP62906 [Medical]
TSGene4736
GENETestsRPL10A
Target ValidationRPL10A
Huge Navigator RPL10A [HugePedia]
snp3D : Map Gene to Disease4736
BioCentury BCIQRPL10A
ClinGenRPL10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4736
Chemical/Pharm GKB GenePA34661
Clinical trialRPL10A
Miscellaneous
canSAR (ICR)RPL10A (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL10A
EVEXRPL10A
GoPubMedRPL10A
iHOPRPL10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:13:19 CEST 2017

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