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RPL11 (ribosomal protein L11)

Identity

Other namesDBA7
GIG34
L11
HGNC (Hugo) RPL11
LocusID (NCBI) 6135
Location 1p36.11
Location_base_pair Starts at 24018269 and ends at 24022915 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPL11   10301
Cards
Entrez_Gene (NCBI)RPL11  6135  ribosomal protein L11
GeneCards (Weizmann)RPL11
Ensembl (Hinxton)ENSG00000142676 [Gene_View]  chr1:24018269-24022915 [Contig_View]  RPL11 [Vega]
ICGC DataPortalENSG00000142676
cBioPortalRPL11
AceView (NCBI)RPL11
Genatlas (Paris)RPL11
WikiGenes6135
SOURCE (Princeton)NM_000975 NM_001199802
Genomic and cartography
GoldenPath (UCSC)RPL11  -  1p36.11   chr1:24018269-24022915 +  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblRPL11 - 1p36.11 [CytoView]
Mapping of homologs : NCBIRPL11 [Mapview]
OMIM604175   612562   
Gene and transcription
Genbank (Entrez)AF432212 AK311816 AY871274 BC018970 BF240826
RefSeq transcript (Entrez)NM_000975 NM_001199802
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_011741 NT_032977 NW_001838573 NW_004929289
Consensus coding sequences : CCDS (NCBI)RPL11
Cluster EST : UnigeneHs.719951 [ NCBI ]
CGAP (NCI)Hs.719951
Alternative Splicing : Fast-db (Paris)GSHG0000241
Alternative Splicing GalleryENSG00000142676
Gene ExpressionRPL11 [ NCBI-GEO ]     RPL11 [ SEEK ]   RPL11 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62913 (Uniprot)
NextProtP62913  [Medical]
With graphics : InterProP62913
Splice isoforms : SwissVarP62913 (Swissvar)
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L5 (PS00358)   
Domains : Interpro (EBI)Ribosomal_L5 [organisation]   Ribosomal_L5_CS [organisation]   Ribosomal_L5_domain [organisation]  
Related proteins : CluSTrP62913
Domain families : Pfam (Sanger)Ribosomal_L5 (PF00281)    Ribosomal_L5_C (PF00673)   
Domain families : Pfam (NCBI)pfam00281    pfam00673   
DMDM Disease mutations6135
Blocks (Seattle)P62913
PDB (SRS)3J3B   
PDB (PDBSum)3J3B   
PDB (IMB)3J3B   
PDB (RSDB)3J3B   
Human Protein AtlasENSG00000142676 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP62913
HPRD10364
IPIIPI00376798   IPI00746438   IPI00647674   IPI00647168   
Protein Interaction databases
DIP (DOE-UCLA)P62913
IntAct (EBI)P62913
FunCoupENSG00000142676
BioGRIDRPL11
InParanoidP62913
Interologous Interaction database P62913
IntegromeDBRPL11
STRING (EMBL)RPL11
Ontologies - Pathways
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleolus  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  protein targeting  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  rRNA binding  cytosolic large ribosomal subunit  protein localization to nucleus  ribosomal large subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleolus  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  protein targeting  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  rRNA binding  cytosolic large ribosomal subunit  protein localization to nucleus  ribosomal large subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPL11
Wikipedia pathwaysRPL11
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPL11
snp3D : Map Gene to Disease6135
SNP (GeneSNP Utah)RPL11
SNP : HGBaseRPL11
Genetic variants : HAPMAPRPL11
Exome VariantRPL11
1000_GenomesRPL11 
ICGC programENSG00000142676 
Somatic Mutations in Cancer : COSMICRPL11 
CONAN: Copy Number AnalysisRPL11 
Mutations and Diseases : HGMDRPL11
Mutations and Diseases : intOGenRPL11
Genomic VariantsRPL11  RPL11 [DGVbeta]
dbVarRPL11
ClinVarRPL11
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604175    612562   
MedgenRPL11
GENETestsRPL11
Disease Genetic AssociationRPL11
Huge Navigator RPL11 [HugePedia]  RPL11 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRPL11
Homology/Alignments : Family Browser (UCSC)RPL11
Phylogenetic Trees/Animal Genes : TreeFamRPL11
Chemical/Protein Interactions : CTD6135
Chemical/Pharm GKB GenePA34664
Clinical trialRPL11
Cancer Resource (Charite)ENSG00000142676
Other databases
Probes
Litterature
PubMed103 Pubmed reference(s) in Entrez
CoreMineRPL11
iHOPRPL11
OncoSearchRPL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 17:03:22 CEST 2014

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