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RPL13 (ribosomal protein L13)

Identity

Alias (NCBI)BBC1
D16S444E
D16S44E
L13
SEMDIST
HGNC (Hugo) RPL13
HGNC Alias symbD16S444E
BBC1
L13
HGNC Alias namebreast basic conserved 1
LocusID (NCBI) 6137
Atlas_Id 42149
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89560711 and ends at 89566829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGRN (1p36.33) / RPL13 (16q24.3)ARID5B (10q21.2) / RPL13 (16q24.3)CLPTM1 (19q13.32) / RPL13 (16q24.3)
CPNE7 (16q24.3) / RPL13 (16q24.3)DDX5 (17q23.3) / RPL13 (16q24.3)ENTPD1 (10q24.1) / RPL13 (16q24.3)
MALAT1 (11q13.1) / RPL13 (16q24.3)MRPL57 (13q12.11) / RPL13 (16q24.3)RPL13 (16q24.3) / CPNE7 (16q24.3)
RPL13 (16q24.3) / MALAT1 (11q13.1)RPL13 (16q24.3) / MAPKAPK3 (3p21.2)RPL13 (16q24.3) / MASP1 (3q27.3)
RPL13 (16q24.3) / MYH9 (22q12.3)RPL13 (16q24.3) / PTRF (17q21.2)RPL13 (16q24.3) / TNFRSF21 (6p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPL13   10303
Cards
Entrez_Gene (NCBI)RPL13    ribosomal protein L13
AliasesBBC1; D16S444E; D16S44E; L13; 
SEMDIST
GeneCards (Weizmann)RPL13
Ensembl hg19 (Hinxton)ENSG00000167526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167526 [Gene_View]  ENSG00000167526 [Sequence]  chr16:89560711-89566829 [Contig_View]  RPL13 [Vega]
ICGC DataPortalENSG00000167526
TCGA cBioPortalRPL13
AceView (NCBI)RPL13
Genatlas (Paris)RPL13
SOURCE (Princeton)RPL13
Genetics Home Reference (NIH)RPL13
Genomic and cartography
GoldenPath hg38 (UCSC)RPL13  -     chr16:89560711-89566829 +  16q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL13  -     16q24.3   [Description]    (hg19-Feb_2009)
GoldenPathRPL13 - 16q24.3 [CytoView hg19]  RPL13 - 16q24.3 [CytoView hg38]
ImmunoBaseENSG00000167526
genome Data Viewer NCBIRPL13 [Mapview hg19]  
OMIM113703   618728   
Gene and transcription
Genbank (Entrez)AB062392 AK025405 AK026501 AK095954 AK127579
RefSeq transcript (Entrez)NM_000977 NM_001243130 NM_001243131 NM_033251
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL13
Alternative Splicing GalleryENSG00000167526
Gene ExpressionRPL13 [ NCBI-GEO ]   RPL13 [ EBI - ARRAY_EXPRESS ]   RPL13 [ SEEK ]   RPL13 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13 [ Firebrowse - Broad ]
GenevisibleExpression of RPL13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6137
GTEX Portal (Tissue expression)RPL13
Human Protein AtlasENSG00000167526-RPL13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26373   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP26373  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP26373
Splice isoforms : SwissVarP26373
PhosPhoSitePlusP26373
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L13E (PS01104)   
Domains : Interpro (EBI)Ribosomal_L13e    Ribosomal_L13e_CS   
Domain families : Pfam (Sanger)Ribosomal_L13e (PF01294)   
Domain families : Pfam (NCBI)pfam01294   
Conserved Domain (NCBI)RPL13
Blocks (Seattle)RPL13
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB Europe4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SuperfamilyP26373
Human Protein Atlas [tissue]ENSG00000167526-RPL13 [tissue]
Peptide AtlasP26373
HPRD06428
IPIIPI00465361   IPI00978971   
Protein Interaction databases
DIP (DOE-UCLA)P26373
IntAct (EBI)P26373
BioGRIDRPL13
STRING (EMBL)RPL13
ZODIACRPL13
Ontologies - Pathways
QuickGOP26373
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  blastocyst development  RNA binding  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  endoplasmic reticulum  cytosol  cytosol  cytosol  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  bone development  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  blastocyst development  RNA binding  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  endoplasmic reticulum  cytosol  cytosol  cytosol  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  bone development  
Pathways : KEGGRibosome   
NDEx NetworkRPL13
Atlas of Cancer Signalling NetworkRPL13
Wikipedia pathwaysRPL13
Orthology - Evolution
OrthoDB6137
GeneTree (enSembl)ENSG00000167526
Phylogenetic Trees/Animal Genes : TreeFamRPL13
HOGENOMP26373
Homologs : HomoloGeneRPL13
Homology/Alignments : Family Browser (UCSC)RPL13
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL13 [16q24.3]  -  CPNE7 [16q24.3]  [FUSC000218]
Fusion : QuiverRPL13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL13 [hg38]
dbVarRPL13
ClinVarRPL13
MonarchRPL13
1000_GenomesRPL13 
Exome Variant ServerRPL13
GNOMAD BrowserENSG00000167526
Varsome BrowserRPL13
Genomic Variants (DGV)RPL13 [DGVbeta]
DECIPHERRPL13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL13 
Mutations
ICGC Data PortalRPL13 
TCGA Data PortalRPL13 
Broad Tumor PortalRPL13
OASIS PortalRPL13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL13
Mutations and Diseases : HGMDRPL13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL13
DgiDB (Drug Gene Interaction Database)RPL13
DoCM (Curated mutations)RPL13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL13 (select a term)
intoGenRPL13
Cancer3DRPL13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM113703    618728   
Orphanet
DisGeNETRPL13
MedgenRPL13
Genetic Testing Registry RPL13
NextProtP26373 [Medical]
GENETestsRPL13
Target ValidationRPL13
Huge Navigator RPL13 [HugePedia]
ClinGenRPL13
Clinical trials, drugs, therapy
MyCancerGenomeRPL13
Protein Interactions : CTD
Pharm GKB GenePA34670
PharosP26373
Clinical trialRPL13
Miscellaneous
canSAR (ICR)RPL13 (select the gene name)
HarmonizomeRPL13
DataMed IndexRPL13
Probes
Litterature
PubMed148 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 25 19:43:49 CET 2021
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