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RPL13 (ribosomal protein L13)

Identity

Alias_symbol (synonym)D16S444E
BBC1
L13
Other aliasD16S44E
HGNC (Hugo) RPL13
LocusID (NCBI) 6137
Atlas_Id 42149
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 89627065 and ends at 89633237 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGRN (1p36.33) / RPL13 (16q24.3)ARID5B (10q21.2) / RPL13 (16q24.3)CLPTM1 (19q13.32) / RPL13 (16q24.3)
CPNE7 (16q24.3) / RPL13 (16q24.3)DDX5 (17q23.3) / RPL13 (16q24.3)ENTPD1 (10q24.1) / RPL13 (16q24.3)
MALAT1 (11q13.1) / RPL13 (16q24.3)MRPL57 (13q12.11) / RPL13 (16q24.3)RPL13 (16q24.3) / CPNE7 (16q24.3)
RPL13 (16q24.3) / MALAT1 (11q13.1)RPL13 (16q24.3) / MAPKAPK3 (3p21.2)RPL13 (16q24.3) / MASP1 (3q27.3)
RPL13 (16q24.3) / MYH9 (22q12.3)RPL13 (16q24.3) / PTRF (17q21.2)RPL13 (16q24.3) / TNFRSF21 (6p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL13   10303
Cards
Entrez_Gene (NCBI)RPL13  6137  ribosomal protein L13
AliasesBBC1; D16S444E; D16S44E; L13
GeneCards (Weizmann)RPL13
Ensembl hg19 (Hinxton)ENSG00000167526 [Gene_View]  chr16:89627065-89633237 [Contig_View]  RPL13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167526 [Gene_View]  chr16:89627065-89633237 [Contig_View]  RPL13 [Vega]
ICGC DataPortalENSG00000167526
TCGA cBioPortalRPL13
AceView (NCBI)RPL13
Genatlas (Paris)RPL13
WikiGenes6137
SOURCE (Princeton)RPL13
Genetics Home Reference (NIH)RPL13
Genomic and cartography
GoldenPath hg19 (UCSC)RPL13  -     chr16:89627065-89633237 +  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL13  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblRPL13 - 16q24.3 [CytoView hg19]  RPL13 - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBIRPL13 [Mapview hg19]  RPL13 [Mapview hg38]
OMIM113703   
Gene and transcription
Genbank (Entrez)AB062392 AK025405 AK026501 AK095954 AK127579
RefSeq transcript (Entrez)NM_000977 NM_001243130 NM_001243131 NM_033251
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)RPL13
Cluster EST : UnigeneHs.410817 [ NCBI ]
CGAP (NCI)Hs.410817
Alternative Splicing GalleryENSG00000167526
Gene ExpressionRPL13 [ NCBI-GEO ]   RPL13 [ EBI - ARRAY_EXPRESS ]   RPL13 [ SEEK ]   RPL13 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6137
GTEX Portal (Tissue expression)RPL13
Protein : pattern, domain, 3D structure
UniProt/SwissProtP26373   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP26373  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP26373
Splice isoforms : SwissVarP26373
PhosPhoSitePlusP26373
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L13E (PS01104)   
Domains : Interpro (EBI)Ribosomal_L13e    Ribosomal_L13e_CS   
Domain families : Pfam (Sanger)Ribosomal_L13e (PF01294)   
Domain families : Pfam (NCBI)pfam01294   
Conserved Domain (NCBI)RPL13
DMDM Disease mutations6137
Blocks (Seattle)RPL13
PDB (SRS)4UG0    4V6X    5AJ0   
PDB (PDBSum)4UG0    4V6X    5AJ0   
PDB (IMB)4UG0    4V6X    5AJ0   
PDB (RSDB)4UG0    4V6X    5AJ0   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0   
SuperfamilyP26373
Human Protein AtlasENSG00000167526
Peptide AtlasP26373
HPRD06428
IPIIPI00465361   IPI00978971   
Protein Interaction databases
DIP (DOE-UCLA)P26373
IntAct (EBI)P26373
FunCoupENSG00000167526
BioGRIDRPL13
STRING (EMBL)RPL13
ZODIACRPL13
Ontologies - Pathways
QuickGOP26373
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic ribosome  poly(A) RNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic ribosome  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL13
Atlas of Cancer Signalling NetworkRPL13
Wikipedia pathwaysRPL13
Orthology - Evolution
OrthoDB6137
GeneTree (enSembl)ENSG00000167526
Phylogenetic Trees/Animal Genes : TreeFamRPL13
HOVERGENP26373
HOGENOMP26373
Homologs : HomoloGeneRPL13
Homology/Alignments : Family Browser (UCSC)RPL13
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL13 [16q24.3]  -  CPNE7 [16q24.3]  [FUSC000218]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL13
dbVarRPL13
ClinVarRPL13
1000_GenomesRPL13 
Exome Variant ServerRPL13
ExAC (Exome Aggregation Consortium)RPL13 (select the gene name)
Genetic variants : HAPMAP6137
Genomic Variants (DGV)RPL13 [DGVbeta]
DECIPHER (Syndromes)16:89627065-89633237  ENSG00000167526
CONAN: Copy Number AnalysisRPL13 
Mutations
ICGC Data PortalRPL13 
TCGA Data PortalRPL13 
Broad Tumor PortalRPL13
OASIS PortalRPL13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL13
DgiDB (Drug Gene Interaction Database)RPL13
DoCM (Curated mutations)RPL13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL13 (select a term)
intoGenRPL13
Cancer3DRPL13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM113703   
Orphanet
MedgenRPL13
Genetic Testing Registry RPL13
NextProtP26373 [Medical]
TSGene6137
GENETestsRPL13
Huge Navigator RPL13 [HugePedia]
snp3D : Map Gene to Disease6137
BioCentury BCIQRPL13
ClinGenRPL13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6137
Chemical/Pharm GKB GenePA34670
Clinical trialRPL13
Miscellaneous
canSAR (ICR)RPL13 (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL13
EVEXRPL13
GoPubMedRPL13
iHOPRPL13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:34 CET 2017

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