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RPL13A (ribosomal protein L13a)

Identity

Alias_namesTSTA1
tissue specific transplantation antigen 1
Alias_symbol (synonym)L13A
Other alias
HGNC (Hugo) RPL13A
LocusID (NCBI) 23521
Atlas_Id 72789
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49487554 and ends at 49492307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD52 (12q13.3) / RPL13A (19q13.33)BHLHE40 (3p26.1) / RPL13A (19q13.33)IFRD1 (7q31.1) / RPL13A (19q13.33)
RPL13A (19q13.33) / ACTG1 (17q25.3)RPL13A (19q13.33) / AGO1 (1p34.3)RPL13A (19q13.33) / ARL6IP5 (3p14.1)
RPL13A (19q13.33) / CCDC155 (19q13.33)RPL13A (19q13.33) / FZD7 (2q33.1)RPL13A (19q13.33) / GTF2IP1 (7q11.23)
RPL13A (19q13.33) / KAZN (1p36.21)RPL13A (19q13.33) / LCAT (16q22.1)RPL13A (19q13.33) / SSBP3 (1p32.3)
TRIP6 (7q22.1) / RPL13A (19q13.33)cytochrome_b () / RPL13A (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL13A   10304
Cards
Entrez_Gene (NCBI)RPL13A  23521  ribosomal protein L13a
AliasesL13A; TSTA1
GeneCards (Weizmann)RPL13A
Ensembl hg19 (Hinxton)ENSG00000142541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142541 [Gene_View]  chr19:49487554-49492307 [Contig_View]  RPL13A [Vega]
ICGC DataPortalENSG00000142541
TCGA cBioPortalRPL13A
AceView (NCBI)RPL13A
Genatlas (Paris)RPL13A
WikiGenes23521
SOURCE (Princeton)RPL13A
Genetics Home Reference (NIH)RPL13A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL13A  -     chr19:49487554-49492307 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL13A  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblRPL13A - 19q13.33 [CytoView hg19]  RPL13A - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRPL13A [Mapview hg19]  RPL13A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB082924 AK056837 AK130605 AK222747 AK291120
RefSeq transcript (Entrez)NM_001270491 NM_012423
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL13A
Cluster EST : UnigeneHs.523185 [ NCBI ]
CGAP (NCI)Hs.523185
Alternative Splicing GalleryENSG00000142541
Gene ExpressionRPL13A [ NCBI-GEO ]   RPL13A [ EBI - ARRAY_EXPRESS ]   RPL13A [ SEEK ]   RPL13A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23521
GTEX Portal (Tissue expression)RPL13A
Human Protein AtlasENSG00000142541-RPL13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40429
Splice isoforms : SwissVarP40429
PhosPhoSitePlusP40429
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L13 (PS00783)   
Domains : Interpro (EBI)Ribosomal_L13    Ribosomal_L13_CS    Ribosomal_L13_euk/arc   
Domain families : Pfam (Sanger)Ribosomal_L13 (PF00572)   
Domain families : Pfam (NCBI)pfam00572   
Conserved Domain (NCBI)RPL13A
DMDM Disease mutations23521
Blocks (Seattle)RPL13A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP40429
Human Protein Atlas [tissue]ENSG00000142541-RPL13A [tissue]
Peptide AtlasP40429
HPRD11775
IPIIPI00304612   IPI00909017   IPI00921201   
Protein Interaction databases
DIP (DOE-UCLA)P40429
IntAct (EBI)P40429
FunCoupENSG00000142541
BioGRIDRPL13A
STRING (EMBL)RPL13A
ZODIACRPL13A
Ontologies - Pathways
QuickGOP40429
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  large ribosomal subunit  membrane  negative regulation of translation  negative regulation of translation  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  cellular response to interferon-gamma  GAIT complex  negative regulation of formation of translation preinitiation complex  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  large ribosomal subunit  membrane  negative regulation of translation  negative regulation of translation  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  cellular response to interferon-gamma  GAIT complex  negative regulation of formation of translation preinitiation complex  
Pathways : KEGGRibosome   
NDEx NetworkRPL13A
Atlas of Cancer Signalling NetworkRPL13A
Wikipedia pathwaysRPL13A
Orthology - Evolution
OrthoDB23521
GeneTree (enSembl)ENSG00000142541
Phylogenetic Trees/Animal Genes : TreeFamRPL13A
HOVERGENP40429
HOGENOMP40429
Homologs : HomoloGeneRPL13A
Homology/Alignments : Family Browser (UCSC)RPL13A
Gene fusions - Rearrangements
Tumor Fusion PortalRPL13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL13A
dbVarRPL13A
ClinVarRPL13A
1000_GenomesRPL13A 
Exome Variant ServerRPL13A
ExAC (Exome Aggregation Consortium)ENSG00000142541
GNOMAD BrowserENSG00000142541
Genetic variants : HAPMAP23521
Genomic Variants (DGV)RPL13A [DGVbeta]
DECIPHERRPL13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL13A 
Mutations
ICGC Data PortalRPL13A 
TCGA Data PortalRPL13A 
Broad Tumor PortalRPL13A
OASIS PortalRPL13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL13A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL13A
DgiDB (Drug Gene Interaction Database)RPL13A
DoCM (Curated mutations)RPL13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL13A (select a term)
intoGenRPL13A
Cancer3DRPL13A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETRPL13A
MedgenRPL13A
Genetic Testing Registry RPL13A
NextProtP40429 [Medical]
TSGene23521
GENETestsRPL13A
Target ValidationRPL13A
Huge Navigator RPL13A [HugePedia]
snp3D : Map Gene to Disease23521
BioCentury BCIQRPL13A
ClinGenRPL13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23521
Chemical/Pharm GKB GenePA38122
Clinical trialRPL13A
Miscellaneous
canSAR (ICR)RPL13A (select the gene name)
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL13A
EVEXRPL13A
GoPubMedRPL13A
iHOPRPL13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:48 CET 2017

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