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RPL13A (ribosomal protein L13a)

Identity

Alias (NCBI)L13A
TSTA1
HGNC (Hugo) RPL13A
HGNC Alias symbL13A
HGNC Previous nameTSTA1
HGNC Previous nametissue specific transplantation antigen 1
LocusID (NCBI) 23521
Atlas_Id 72789
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49487608 and ends at 49492307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANKRD52 (12q13.3) / RPL13A (19q13.33)BHLHE40 (3p26.1) / RPL13A (19q13.33)IFRD1 (7q31.1) / RPL13A (19q13.33)
RPL13A (19q13.33) / ACTG1 (17q25.3)RPL13A (19q13.33) / AGO1 (1p34.3)RPL13A (19q13.33) / ARL6IP5 (3p14.1)
RPL13A (19q13.33) / CCDC155 (19q13.33)RPL13A (19q13.33) / FZD7 (2q33.1)RPL13A (19q13.33) / GTF2IP1 (7q11.23)
RPL13A (19q13.33) / KAZN (1p36.21)RPL13A (19q13.33) / LCAT (16q22.1)RPL13A (19q13.33) / SSBP3 (1p32.3)
TRIP6 (7q22.1) / RPL13A (19q13.33)cytochrome_b () / RPL13A (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPL13A   10304
Cards
Entrez_Gene (NCBI)RPL13A    ribosomal protein L13a
AliasesL13A; TSTA1
GeneCards (Weizmann)RPL13A
Ensembl hg19 (Hinxton)ENSG00000142541 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000142541 [Gene_View]  ENSG00000142541 [Sequence]  chr19:49487608-49492307 [Contig_View]  RPL13A [Vega]
ICGC DataPortalENSG00000142541
TCGA cBioPortalRPL13A
AceView (NCBI)RPL13A
Genatlas (Paris)RPL13A
SOURCE (Princeton)RPL13A
Genetics Home Reference (NIH)RPL13A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL13A  -     chr19:49487608-49492307 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL13A  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathRPL13A - 19q13.33 [CytoView hg19]  RPL13A - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000142541
Genome Data Viewer NCBIRPL13A [Mapview hg19]  
OMIM619225   
Gene and transcription
Genbank (Entrez)AB082924 AK056837 AK130605 AK222747 AK291120
RefSeq transcript (Entrez)NM_001270491 NM_012423
Consensus coding sequences : CCDS (NCBI)RPL13A
Gene ExpressionRPL13A [ NCBI-GEO ]   RPL13A [ EBI - ARRAY_EXPRESS ]   RPL13A [ SEEK ]   RPL13A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13A [ Firebrowse - Broad ]
GenevisibleExpression of RPL13A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23521
GTEX Portal (Tissue expression)RPL13A
Human Protein AtlasENSG00000142541-RPL13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40429   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40429  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40429
PhosPhoSitePlusP40429
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L13 (PS00783)   
Domains : Interpro (EBI)Ribosomal_L13    Ribosomal_L13_CS    Ribosomal_L13_euk/arc    Ribosomal_L13_sf   
Domain families : Pfam (Sanger)Ribosomal_L13 (PF00572)   
Domain families : Pfam (NCBI)pfam00572   
Conserved Domain (NCBI)RPL13A
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB Europe4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SuperfamilyP40429
AlphaFold pdb e-kbP40429   
Human Protein Atlas [tissue]ENSG00000142541-RPL13A [tissue]
HPRD11775
Protein Interaction databases
DIP (DOE-UCLA)P40429
IntAct (EBI)P40429
BioGRIDRPL13A
STRING (EMBL)RPL13A
ZODIACRPL13A
Ontologies - Pathways
QuickGOP40429
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  large ribosomal subunit  membrane  negative regulation of translation  negative regulation of translation  negative regulation of translation  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  cellular response to interferon-gamma  GAIT complex  negative regulation of formation of translation preinitiation complex  ribonucleoprotein complex  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  large ribosomal subunit  membrane  negative regulation of translation  negative regulation of translation  negative regulation of translation  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  cellular response to interferon-gamma  GAIT complex  negative regulation of formation of translation preinitiation complex  ribonucleoprotein complex  
Pathways : KEGGRibosome   
NDEx NetworkRPL13A
Atlas of Cancer Signalling NetworkRPL13A
Wikipedia pathwaysRPL13A
Orthology - Evolution
OrthoDB23521
GeneTree (enSembl)ENSG00000142541
Phylogenetic Trees/Animal Genes : TreeFamRPL13A
Homologs : HomoloGeneRPL13A
Homology/Alignments : Family Browser (UCSC)RPL13A
Gene fusions - Rearrangements
Fusion : QuiverRPL13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL13A
dbVarRPL13A
ClinVarRPL13A
MonarchRPL13A
1000_GenomesRPL13A 
Exome Variant ServerRPL13A
GNOMAD BrowserENSG00000142541
Varsome BrowserRPL13A
ACMGRPL13A variants
VarityP40429
Genomic Variants (DGV)RPL13A [DGVbeta]
DECIPHERRPL13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL13A 
Mutations
ICGC Data PortalRPL13A 
TCGA Data PortalRPL13A 
Broad Tumor PortalRPL13A
OASIS PortalRPL13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL13A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL13A
Mutations and Diseases : HGMDRPL13A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPL13A
DgiDB (Drug Gene Interaction Database)RPL13A
DoCM (Curated mutations)RPL13A
CIViC (Clinical Interpretations of Variants in Cancer)RPL13A
Cancer3DRPL13A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619225   
Orphanet
DisGeNETRPL13A
MedgenRPL13A
Genetic Testing Registry RPL13A
NextProtP40429 [Medical]
GENETestsRPL13A
Target ValidationRPL13A
Huge Navigator RPL13A [HugePedia]
ClinGenRPL13A
Clinical trials, drugs, therapy
MyCancerGenomeRPL13A
Protein Interactions : CTDRPL13A
Pharm GKB GenePA38122
PharosP40429
Clinical trialRPL13A
Miscellaneous
canSAR (ICR)RPL13A
HarmonizomeRPL13A
DataMed IndexRPL13A
Probes
Litterature
PubMed132 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:08 CEST 2021

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