Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPL13AP20 (ribosomal protein L13a pseudogene 20)

Identity

Other aliasRPL13A_9_1211
HGNC (Hugo) RPL13AP20
LocusID (NCBI) 387841
Atlas_Id 72791
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 13028411 and ends at 13029070 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCDC137 (17q25.3) / RPL13AP20 (12p13.1)RPL13AP20 (12p13.1) / DYNC1H1 (14q32.31)UQCRC1 (3p21.31) / RPL13AP20 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL13AP20   35709
Cards
Entrez_Gene (NCBI)RPL13AP20  387841  ribosomal protein L13a pseudogene 20
AliasesRPL13A_9_1211
GeneCards (Weizmann)RPL13AP20
Ensembl hg19 (Hinxton)ENSG00000234498 [Gene_View]  chr12:13028411-13029070 [Contig_View]  RPL13AP20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234498 [Gene_View]  chr12:13028411-13029070 [Contig_View]  RPL13AP20 [Vega]
ICGC DataPortalENSG00000234498
TCGA cBioPortalRPL13AP20
AceView (NCBI)RPL13AP20
Genatlas (Paris)RPL13AP20
WikiGenes387841
SOURCE (Princeton)RPL13AP20
Genetics Home Reference (NIH)RPL13AP20
Genomic and cartography
GoldenPath hg19 (UCSC)RPL13AP20  -     chr12:13028411-13029070 +  12p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL13AP20  -     12p13.1   [Description]    (hg38-Dec_2013)
EnsemblRPL13AP20 - 12p13.1 [CytoView hg19]  RPL13AP20 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIRPL13AP20 [Mapview hg19]  RPL13AP20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI609875
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)RPL13AP20
Cluster EST : UnigeneHs.631728 [ NCBI ]
CGAP (NCI)Hs.631728
Alternative Splicing GalleryENSG00000234498
Gene ExpressionRPL13AP20 [ NCBI-GEO ]   RPL13AP20 [ EBI - ARRAY_EXPRESS ]   RPL13AP20 [ SEEK ]   RPL13AP20 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13AP20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387841
GTEX Portal (Tissue expression)RPL13AP20
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPL13AP20
DMDM Disease mutations387841
Blocks (Seattle)RPL13AP20
Human Protein AtlasENSG00000234498
Protein Interaction databases
FunCoupENSG00000234498
BioGRIDRPL13AP20
STRING (EMBL)RPL13AP20
ZODIACRPL13AP20
Ontologies - Pathways
Huge Navigator RPL13AP20 [HugePedia]
snp3D : Map Gene to Disease387841
BioCentury BCIQRPL13AP20
ClinGenRPL13AP20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387841
Clinical trialRPL13AP20
Miscellaneous
canSAR (ICR)RPL13AP20 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL13AP20
EVEXRPL13AP20
GoPubMedRPL13AP20
iHOPRPL13AP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.