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RPL13AP20 (ribosomal protein L13a pseudogene 20)

Identity

Other aliasRPL13A_9_1211
HGNC (Hugo) RPL13AP20
LocusID (NCBI) 387841
Atlas_Id 72791
Location 12p13.1  [Link to chromosome band 12p13]
Location_base_pair Starts at 12875477 and ends at 12876136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CCDC137 (17q25.3) / RPL13AP20 (12p13.1)RPL13AP20 (12p13.1) / DYNC1H1 (14q32.31)UQCRC1 (3p21.31) / RPL13AP20 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL13AP20   35709
Cards
Entrez_Gene (NCBI)RPL13AP20  387841  ribosomal protein L13a pseudogene 20
AliasesRPL13A_9_1211
GeneCards (Weizmann)RPL13AP20
Ensembl hg19 (Hinxton)ENSG00000234498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234498 [Gene_View]  chr12:12875477-12876136 [Contig_View]  RPL13AP20 [Vega]
ICGC DataPortalENSG00000234498
TCGA cBioPortalRPL13AP20
AceView (NCBI)RPL13AP20
Genatlas (Paris)RPL13AP20
WikiGenes387841
SOURCE (Princeton)RPL13AP20
Genetics Home Reference (NIH)RPL13AP20
Genomic and cartography
GoldenPath hg38 (UCSC)RPL13AP20  -     chr12:12875477-12876136 +  12p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL13AP20  -     12p13.1   [Description]    (hg19-Feb_2009)
EnsemblRPL13AP20 - 12p13.1 [CytoView hg19]  RPL13AP20 - 12p13.1 [CytoView hg38]
Mapping of homologs : NCBIRPL13AP20 [Mapview hg19]  RPL13AP20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI609875
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL13AP20
Cluster EST : UnigeneHs.631728 [ NCBI ]
CGAP (NCI)Hs.631728
Alternative Splicing GalleryENSG00000234498
Gene ExpressionRPL13AP20 [ NCBI-GEO ]   RPL13AP20 [ EBI - ARRAY_EXPRESS ]   RPL13AP20 [ SEEK ]   RPL13AP20 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13AP20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387841
GTEX Portal (Tissue expression)RPL13AP20
Human Protein AtlasENSG00000234498-RPL13AP20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPL13AP20
DMDM Disease mutations387841
Blocks (Seattle)RPL13AP20
Human Protein Atlas [tissue]ENSG00000234498-RPL13AP20 [tissue]
Protein Interaction databases
FunCoupENSG00000234498
BioGRIDRPL13AP20
STRING (EMBL)RPL13AP20
ZODIACRPL13AP20
Ontologies - Pathways
Huge Navigator RPL13AP20 [HugePedia]
snp3D : Map Gene to Disease387841
BioCentury BCIQRPL13AP20
ClinGenRPL13AP20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387841
Clinical trialRPL13AP20
Miscellaneous
canSAR (ICR)RPL13AP20 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL13AP20
EVEXRPL13AP20
GoPubMedRPL13AP20
iHOPRPL13AP20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:25:38 CET 2017

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