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RPL13AP3 (ribosomal protein L13a pseudogene 3)

Identity

Other aliasRPL13A_11_1370
HGNC (Hugo) RPL13AP3
LocusID (NCBI) 645683
Atlas_Id 72792
Location 14q22.3  [Link to chromosome band 14q22]
Location_base_pair Starts at 55766245 and ends at 55767717 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL13AP3   23539
Cards
Entrez_Gene (NCBI)RPL13AP3  645683  ribosomal protein L13a pseudogene 3
AliasesRPL13A_11_1370
GeneCards (Weizmann)RPL13AP3
Ensembl hg19 (Hinxton)ENSG00000177350 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177350 [Gene_View]  chr14:55766245-55767717 [Contig_View]  RPL13AP3 [Vega]
ICGC DataPortalENSG00000177350
TCGA cBioPortalRPL13AP3
AceView (NCBI)RPL13AP3
Genatlas (Paris)RPL13AP3
WikiGenes645683
SOURCE (Princeton)RPL13AP3
Genetics Home Reference (NIH)RPL13AP3
Genomic and cartography
GoldenPath hg38 (UCSC)RPL13AP3  -     chr14:55766245-55767717 +  14q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL13AP3  -     14q22.3   [Description]    (hg19-Feb_2009)
EnsemblRPL13AP3 - 14q22.3 [CytoView hg19]  RPL13AP3 - 14q22.3 [CytoView hg38]
Mapping of homologs : NCBIRPL13AP3 [Mapview hg19]  RPL13AP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC067891
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL13AP3
Cluster EST : UnigeneHs.663461 [ NCBI ]
CGAP (NCI)Hs.663461
Alternative Splicing GalleryENSG00000177350
Gene ExpressionRPL13AP3 [ NCBI-GEO ]   RPL13AP3 [ EBI - ARRAY_EXPRESS ]   RPL13AP3 [ SEEK ]   RPL13AP3 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL13AP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645683
GTEX Portal (Tissue expression)RPL13AP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVV1
Splice isoforms : SwissVarQ6NVV1
PhosPhoSitePlusQ6NVV1
Domains : Interpro (EBI)Ribosomal_L13    Ribosomal_L13_euk/arc   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPL13AP3
DMDM Disease mutations645683
Blocks (Seattle)RPL13AP3
SuperfamilyQ6NVV1
Human Protein AtlasENSG00000177350
Peptide AtlasQ6NVV1
IPIIPI00432865   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVV1
IntAct (EBI)Q6NVV1
FunCoupENSG00000177350
BioGRIDRPL13AP3
STRING (EMBL)RPL13AP3
ZODIACRPL13AP3
Ontologies - Pathways
QuickGOQ6NVV1
Ontology : AmiGOmRNA binding  structural constituent of ribosome  nucleus  translation  cytosolic large ribosomal subunit  extracellular exosome  
Ontology : EGO-EBImRNA binding  structural constituent of ribosome  nucleus  translation  cytosolic large ribosomal subunit  extracellular exosome  
NDEx NetworkRPL13AP3
Atlas of Cancer Signalling NetworkRPL13AP3
Wikipedia pathwaysRPL13AP3
Orthology - Evolution
OrthoDB645683
GeneTree (enSembl)ENSG00000177350
Phylogenetic Trees/Animal Genes : TreeFamRPL13AP3
HOVERGENQ6NVV1
HOGENOMQ6NVV1
Homologs : HomoloGeneRPL13AP3
Homology/Alignments : Family Browser (UCSC)RPL13AP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL13AP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL13AP3
dbVarRPL13AP3
ClinVarRPL13AP3
1000_GenomesRPL13AP3 
Exome Variant ServerRPL13AP3
ExAC (Exome Aggregation Consortium)RPL13AP3 (select the gene name)
Genetic variants : HAPMAP645683
Genomic Variants (DGV)RPL13AP3 [DGVbeta]
DECIPHERRPL13AP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL13AP3 
Mutations
ICGC Data PortalRPL13AP3 
TCGA Data PortalRPL13AP3 
Broad Tumor PortalRPL13AP3
OASIS PortalRPL13AP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPL13AP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL13AP3
DgiDB (Drug Gene Interaction Database)RPL13AP3
DoCM (Curated mutations)RPL13AP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL13AP3 (select a term)
intoGenRPL13AP3
Cancer3DRPL13AP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL13AP3
Genetic Testing Registry RPL13AP3
NextProtQ6NVV1 [Medical]
TSGene645683
GENETestsRPL13AP3
Target ValidationRPL13AP3
Huge Navigator RPL13AP3 [HugePedia]
snp3D : Map Gene to Disease645683
BioCentury BCIQRPL13AP3
ClinGenRPL13AP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645683
Chemical/Pharm GKB GenePA142671034
Clinical trialRPL13AP3
Miscellaneous
canSAR (ICR)RPL13AP3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL13AP3
EVEXRPL13AP3
GoPubMedRPL13AP3
iHOPRPL13AP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:13 CEST 2017

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