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RPL14 (ribosomal protein L14)

Identity

Alias_symbol (synonym)L14
hRL14
RL14
CTG-B33
Other aliasCAG-ISL-7
HGNC (Hugo) RPL14
LocusID (NCBI) 9045
Atlas_Id 72796
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 40457339 and ends at 40462372 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD93 (20p11.21) / RPL14 (3p22.1)E2F4 (16q22.1) / RPL14 (3p22.1)F2RL3 (19p13.11) / RPL14 (3p22.1)
NCOR2 (12q24.31) / RPL14 (3p22.1)P3H3 (12p13.31) / RPL14 (3p22.1)POMC (2p23.3) / RPL14 (3p22.1)
RPL14 (3p22.1) / E2F4 (16q22.1)RPL14 (3p22.1) / H19 (11p15.5)RPL14 (3p22.1) / MED12 (Xq13.1)
RPL14 (3p22.1) / RPL14 (3p22.1)RPL14 (3p22.1) / S100A16 (1q21.3)RPL14 (3p22.1) / SENP6 (6q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL14   10305
Cards
Entrez_Gene (NCBI)RPL14  9045  ribosomal protein L14
AliasesCAG-ISL-7; CTG-B33; L14; RL14; 
hRL14
GeneCards (Weizmann)RPL14
Ensembl hg19 (Hinxton)ENSG00000188846 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188846 [Gene_View]  chr3:40457339-40462372 [Contig_View]  RPL14 [Vega]
ICGC DataPortalENSG00000188846
TCGA cBioPortalRPL14
AceView (NCBI)RPL14
Genatlas (Paris)RPL14
WikiGenes9045
SOURCE (Princeton)RPL14
Genetics Home Reference (NIH)RPL14
Genomic and cartography
GoldenPath hg38 (UCSC)RPL14  -     chr3:40457339-40462372 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL14  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblRPL14 - 3p22.1 [CytoView hg19]  RPL14 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBIRPL14 [Mapview hg19]  RPL14 [Mapview hg38]
OMIM617414   
Gene and transcription
Genbank (Entrez)AK222750 AK223111 AK290674 AK292045 AK300873
RefSeq transcript (Entrez)NM_001034996 NM_003973
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL14
Cluster EST : UnigeneHs.446522 [ NCBI ]
CGAP (NCI)Hs.446522
Alternative Splicing GalleryENSG00000188846
Gene ExpressionRPL14 [ NCBI-GEO ]   RPL14 [ EBI - ARRAY_EXPRESS ]   RPL14 [ SEEK ]   RPL14 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9045
GTEX Portal (Tissue expression)RPL14
Protein : pattern, domain, 3D structure
UniProt/SwissProtP50914   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP50914  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP50914
Splice isoforms : SwissVarP50914
PhosPhoSitePlusP50914
Domains : Interpro (EBI)Rib_L2_dom2    Ribosomal_L14e_dom    Translation_prot_SH3-like   
Domain families : Pfam (Sanger)Ribosomal_L14e (PF01929)   
Domain families : Pfam (NCBI)pfam01929   
Conserved Domain (NCBI)RPL14
DMDM Disease mutations9045
Blocks (Seattle)RPL14
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP50914
Human Protein AtlasENSG00000188846
Peptide AtlasP50914
HPRD10617
IPIIPI00815843   IPI00555744   IPI00925323   IPI00925265   
Protein Interaction databases
DIP (DOE-UCLA)P50914
IntAct (EBI)P50914
FunCoupENSG00000188846
BioGRIDRPL14
STRING (EMBL)RPL14
ZODIACRPL14
Ontologies - Pathways
QuickGOP50914
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  ribosomal large subunit biogenesis  cadherin binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  ribosomal large subunit biogenesis  cadherin binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL14
Atlas of Cancer Signalling NetworkRPL14
Wikipedia pathwaysRPL14
Orthology - Evolution
OrthoDB9045
GeneTree (enSembl)ENSG00000188846
Phylogenetic Trees/Animal Genes : TreeFamRPL14
HOVERGENP50914
HOGENOMP50914
Homologs : HomoloGeneRPL14
Homology/Alignments : Family Browser (UCSC)RPL14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL14
dbVarRPL14
ClinVarRPL14
1000_GenomesRPL14 
Exome Variant ServerRPL14
ExAC (Exome Aggregation Consortium)RPL14 (select the gene name)
Genetic variants : HAPMAP9045
Genomic Variants (DGV)RPL14 [DGVbeta]
DECIPHERRPL14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL14 
Mutations
ICGC Data PortalRPL14 
TCGA Data PortalRPL14 
Broad Tumor PortalRPL14
OASIS PortalRPL14 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPL14
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL14
DgiDB (Drug Gene Interaction Database)RPL14
DoCM (Curated mutations)RPL14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL14 (select a term)
intoGenRPL14
Cancer3DRPL14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617414   
Orphanet
MedgenRPL14
Genetic Testing Registry RPL14
NextProtP50914 [Medical]
TSGene9045
GENETestsRPL14
Target ValidationRPL14
Huge Navigator RPL14 [HugePedia]
snp3D : Map Gene to Disease9045
BioCentury BCIQRPL14
ClinGenRPL14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9045
Chemical/Pharm GKB GenePA34673
Clinical trialRPL14
Miscellaneous
canSAR (ICR)RPL14 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL14
EVEXRPL14
GoPubMedRPL14
iHOPRPL14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:43 CEST 2017

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