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RPL15 (ribosomal protein L15)

Identity

Alias_symbol (synonym)RPL10
RPLY10
RPYL10
EC45
L15
Other aliasDBA12
HGNC (Hugo) RPL15
LocusID (NCBI) 6138
Atlas_Id 42150
Location 3p24.2  [Link to chromosome band 3p24]
Location_base_pair Starts at 23958295 and ends at 23962347 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DPYSL2 (8p21.2) / RPL15 (3p24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Diamond-Blackfan anemia (DBA)


External links

Nomenclature
HGNC (Hugo)RPL15   10306
Cards
Entrez_Gene (NCBI)RPL15  6138  ribosomal protein L15
AliasesDBA12; EC45; L15; RPL10; 
RPLY10; RPYL10
GeneCards (Weizmann)RPL15
Ensembl hg19 (Hinxton)ENSG00000174748 [Gene_View]  chr3:23958295-23962347 [Contig_View]  RPL15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174748 [Gene_View]  chr3:23958295-23962347 [Contig_View]  RPL15 [Vega]
ICGC DataPortalENSG00000174748
TCGA cBioPortalRPL15
AceView (NCBI)RPL15
Genatlas (Paris)RPL15
WikiGenes6138
SOURCE (Princeton)RPL15
Genetics Home Reference (NIH)RPL15
Genomic and cartography
GoldenPath hg19 (UCSC)RPL15  -     chr3:23958295-23962347 +  3p24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL15  -     3p24.2   [Description]    (hg38-Dec_2013)
EnsemblRPL15 - 3p24.2 [CytoView hg19]  RPL15 - 3p24.2 [CytoView hg38]
Mapping of homologs : NCBIRPL15 [Mapview hg19]  RPL15 [Mapview hg38]
OMIM604174   615550   
Gene and transcription
Genbank (Entrez)AF279903 AF283772 AK091751 AK098795 AK129815
RefSeq transcript (Entrez)NM_001253379 NM_001253380 NM_001253382 NM_001253383 NM_001253384 NM_002948
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_033850 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)RPL15
Cluster EST : UnigeneHs.592455 [ NCBI ]
CGAP (NCI)Hs.592455
Alternative Splicing GalleryENSG00000174748
Gene ExpressionRPL15 [ NCBI-GEO ]   RPL15 [ EBI - ARRAY_EXPRESS ]   RPL15 [ SEEK ]   RPL15 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6138
GTEX Portal (Tissue expression)RPL15
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61313   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61313  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61313
Splice isoforms : SwissVarP61313
PhosPhoSitePlusP61313
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L15E (PS01194)   
Domains : Interpro (EBI)Rbsml_L15e_core_dom    Ribosomal_L15e    Ribosomal_L15e_CS    Ribosomal_L23/L15e_core_dom   
Domain families : Pfam (Sanger)Ribosomal_L15e (PF00827)   
Domain families : Pfam (NCBI)pfam00827   
Conserved Domain (NCBI)RPL15
DMDM Disease mutations6138
Blocks (Seattle)RPL15
PDB (SRS)4UG0    4V6X    5AJ0   
PDB (PDBSum)4UG0    4V6X    5AJ0   
PDB (IMB)4UG0    4V6X    5AJ0   
PDB (RSDB)4UG0    4V6X    5AJ0   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0   
SuperfamilyP61313
Human Protein AtlasENSG00000174748
Peptide AtlasP61313
HPRD16043
IPIIPI00470528   IPI01018660   IPI00909437   IPI00910417   IPI00925058   IPI00926202   IPI00927715   
Protein Interaction databases
DIP (DOE-UCLA)P61313
IntAct (EBI)P61313
FunCoupENSG00000174748
BioGRIDRPL15
STRING (EMBL)RPL15
ZODIACRPL15
Ontologies - Pathways
QuickGOP61313
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  ribosome  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  poly(A) RNA binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  ribosome  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  poly(A) RNA binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL15
Atlas of Cancer Signalling NetworkRPL15
Wikipedia pathwaysRPL15
Orthology - Evolution
OrthoDB6138
GeneTree (enSembl)ENSG00000174748
Phylogenetic Trees/Animal Genes : TreeFamRPL15
HOVERGENP61313
HOGENOMP61313
Homologs : HomoloGeneRPL15
Homology/Alignments : Family Browser (UCSC)RPL15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL15
dbVarRPL15
ClinVarRPL15
1000_GenomesRPL15 
Exome Variant ServerRPL15
ExAC (Exome Aggregation Consortium)RPL15 (select the gene name)
Genetic variants : HAPMAP6138
Genomic Variants (DGV)RPL15 [DGVbeta]
DECIPHER (Syndromes)3:23958295-23962347  ENSG00000174748
CONAN: Copy Number AnalysisRPL15 
Mutations
ICGC Data PortalRPL15 
TCGA Data PortalRPL15 
Broad Tumor PortalRPL15
OASIS PortalRPL15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPL15
DgiDB (Drug Gene Interaction Database)RPL15
DoCM (Curated mutations)RPL15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL15 (select a term)
intoGenRPL15
Cancer3DRPL15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604174    615550   
Orphanet429   
MedgenRPL15
Genetic Testing Registry RPL15
NextProtP61313 [Medical]
TSGene6138
GENETestsRPL15
Huge Navigator RPL15 [HugePedia]
snp3D : Map Gene to Disease6138
BioCentury BCIQRPL15
ClinGenRPL15 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6138
Chemical/Pharm GKB GenePA34674
Clinical trialRPL15
Miscellaneous
canSAR (ICR)RPL15 (select the gene name)
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL15
EVEXRPL15
GoPubMedRPL15
iHOPRPL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:34 CET 2017

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