Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPL17 (ribosomal protein L17)

Identity

Alias_symbol (synonym)rpL23
L17
Other aliasPD-1
RPL23
HGNC (Hugo) RPL17
LocusID (NCBI) 6139
Atlas_Id 72797
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 47014851 and ends at 47018935 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL17   10307
Cards
Entrez_Gene (NCBI)RPL17  6139  ribosomal protein L17
AliasesL17; PD-1; RPL23
GeneCards (Weizmann)RPL17
Ensembl hg19 (Hinxton)ENSG00000265681 [Gene_View]  chr18:47014851-47018935 [Contig_View]  RPL17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000265681 [Gene_View]  chr18:47014851-47018935 [Contig_View]  RPL17 [Vega]
ICGC DataPortalENSG00000265681
TCGA cBioPortalRPL17
AceView (NCBI)RPL17
Genatlas (Paris)RPL17
WikiGenes6139
SOURCE (Princeton)RPL17
Genetics Home Reference (NIH)RPL17
Genomic and cartography
GoldenPath hg19 (UCSC)RPL17  -     chr18:47014851-47018935 -  18q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL17  -     18q21.1   [Description]    (hg38-Dec_2013)
EnsemblRPL17 - 18q21.1 [CytoView hg19]  RPL17 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBIRPL17 [Mapview hg19]  RPL17 [Mapview hg38]
OMIM603661   
Gene and transcription
Genbank (Entrez)AA148652 AK304659 AK311720 AK311828 BC000502
RefSeq transcript (Entrez)NM_000985 NM_001035006 NM_001199340 NM_001199341 NM_001199342 NM_001199343 NM_001199344 NM_001199345
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)RPL17
Cluster EST : UnigeneHs.485081 [ NCBI ]
CGAP (NCI)Hs.485081
Alternative Splicing GalleryENSG00000265681
Gene ExpressionRPL17 [ NCBI-GEO ]   RPL17 [ EBI - ARRAY_EXPRESS ]   RPL17 [ SEEK ]   RPL17 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6139
GTEX Portal (Tissue expression)RPL17
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18621   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18621  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18621
Splice isoforms : SwissVarP18621
PhosPhoSitePlusP18621
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L22 (PS00464)   
Domains : Interpro (EBI)Ribosomal_L22    Ribosomal_L22/L17_CS    Ribosomal_L22/L17_euk/arc   
Domain families : Pfam (Sanger)Ribosomal_L22 (PF00237)   
Domain families : Pfam (NCBI)pfam00237   
Conserved Domain (NCBI)RPL17
DMDM Disease mutations6139
Blocks (Seattle)RPL17
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Structural Biology KnowledgeBase4V6X   
SCOP (Structural Classification of Proteins)4V6X   
CATH (Classification of proteins structures)4V6X   
SuperfamilyP18621
Human Protein AtlasENSG00000265681
Peptide AtlasP18621
HPRD04715
IPIIPI00413324   IPI00979226   
Protein Interaction databases
DIP (DOE-UCLA)P18621
IntAct (EBI)P18621
FunCoupENSG00000265681
BioGRIDRPL17
STRING (EMBL)RPL17
ZODIACRPL17
Ontologies - Pathways
QuickGOP18621
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  nucleus  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  structural constituent of ribosome  nucleus  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL17
Atlas of Cancer Signalling NetworkRPL17
Wikipedia pathwaysRPL17
Orthology - Evolution
OrthoDB6139
GeneTree (enSembl)ENSG00000265681
Phylogenetic Trees/Animal Genes : TreeFamRPL17
HOVERGENP18621
HOGENOMP18621
Homologs : HomoloGeneRPL17
Homology/Alignments : Family Browser (UCSC)RPL17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL17
dbVarRPL17
ClinVarRPL17
1000_GenomesRPL17 
Exome Variant ServerRPL17
ExAC (Exome Aggregation Consortium)RPL17 (select the gene name)
Genetic variants : HAPMAP6139
Genomic Variants (DGV)RPL17 [DGVbeta]
DECIPHER (Syndromes)18:47014851-47018935  ENSG00000265681
CONAN: Copy Number AnalysisRPL17 
Mutations
ICGC Data PortalRPL17 
TCGA Data PortalRPL17 
Broad Tumor PortalRPL17
OASIS PortalRPL17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL17
DgiDB (Drug Gene Interaction Database)RPL17
DoCM (Curated mutations)RPL17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL17 (select a term)
intoGenRPL17
Cancer3DRPL17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603661   
Orphanet
MedgenRPL17
Genetic Testing Registry RPL17
NextProtP18621 [Medical]
TSGene6139
GENETestsRPL17
Huge Navigator RPL17 [HugePedia]
snp3D : Map Gene to Disease6139
BioCentury BCIQRPL17
ClinGenRPL17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6139
Chemical/Pharm GKB GenePA34676
Clinical trialRPL17
Miscellaneous
canSAR (ICR)RPL17 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL17
EVEXRPL17
GoPubMedRPL17
iHOPRPL17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:39 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.