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RPL18 (ribosomal protein L18)

Identity

Alias_symbol (synonym)L18
Other alias
HGNC (Hugo) RPL18
LocusID (NCBI) 6141
Atlas_Id 72799
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 49118584 and ends at 49122675 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HMGA1 (6p21.31) / RPL18 (19q13.33)LA16c-306E5.1 () / RPL18 (19q13.33)PDIA4 (7q36.1) / RPL18 (19q13.33)
RPL18 (19q13.33) / ABCF1 (6p21.33)RPL18 (19q13.33) / AR (Xq12)RPL18 (19q13.33) / C15orf57 (15q15.1)
RPL18 (19q13.33) / CFB (6p21.33)RPL18 (19q13.33) / DNM2 (19p13.2)RPL18 (19q13.33) / EGR3 (8p21.3)
RPL18 (19q13.33) / FAM134C (17q21.2)RPL18 (19q13.33) / GANAB (11q12.3)RPL18 (19q13.33) / KCNIP1 (5q35.1)
RPL18 (19q13.33) / LGMN (14q32.12)RPL18 (19q13.33) / NDC80 (18p11.32)RPL18 (19q13.33) / NFE2L2 (2q31.2)
RPL18 (19q13.33) / SQSTM1 (5q35.3)RPL18 (19q13.33) / TAGLN (11q23.3)RPL18 (19q13.33) / ZNF827 (4q31.21)
RPL18P13 () / RPL18 (19q13.33)RPL18 ABCF1RPL18 AR
RPL18 ZNF827

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL18   10310
Cards
Entrez_Gene (NCBI)RPL18  6141  ribosomal protein L18
AliasesL18
GeneCards (Weizmann)RPL18
Ensembl hg19 (Hinxton)ENSG00000063177 [Gene_View]  chr19:49118584-49122675 [Contig_View]  RPL18 [Vega]
Ensembl hg38 (Hinxton)ENSG00000063177 [Gene_View]  chr19:49118584-49122675 [Contig_View]  RPL18 [Vega]
ICGC DataPortalENSG00000063177
TCGA cBioPortalRPL18
AceView (NCBI)RPL18
Genatlas (Paris)RPL18
WikiGenes6141
SOURCE (Princeton)RPL18
Genetics Home Reference (NIH)RPL18
Genomic and cartography
GoldenPath hg19 (UCSC)RPL18  -     chr19:49118584-49122675 -  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL18  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblRPL18 - 19q13.33 [CytoView hg19]  RPL18 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIRPL18 [Mapview hg19]  RPL18 [Mapview hg38]
OMIM604179   
Gene and transcription
Genbank (Entrez)AI921565 AK026558 AK091257 AK293386 BC000374
RefSeq transcript (Entrez)NM_000979 NM_001270490
RefSeq genomic (Entrez)NC_000019 NC_018930 NG_029867 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)RPL18
Cluster EST : UnigeneHs.515517 [ NCBI ]
CGAP (NCI)Hs.515517
Alternative Splicing GalleryENSG00000063177
Gene ExpressionRPL18 [ NCBI-GEO ]   RPL18 [ EBI - ARRAY_EXPRESS ]   RPL18 [ SEEK ]   RPL18 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6141
GTEX Portal (Tissue expression)RPL18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07020
Splice isoforms : SwissVarQ07020
PhosPhoSitePlusQ07020
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L18E (PS01106)   
Domains : Interpro (EBI)Ribosomal_L18e    Ribosomal_L18e/L15P    Ribosomal_L18e_CS   
Domain families : Pfam (Sanger)Ribosomal_L18e (PF00828)   
Domain families : Pfam (NCBI)pfam00828   
Conserved Domain (NCBI)RPL18
DMDM Disease mutations6141
Blocks (Seattle)RPL18
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Structural Biology KnowledgeBase4V6X   
SCOP (Structural Classification of Proteins)4V6X   
CATH (Classification of proteins structures)4V6X   
SuperfamilyQ07020
Human Protein AtlasENSG00000063177
Peptide AtlasQ07020
HPRD16046
IPIIPI00215719   IPI00908950   IPI01020905   IPI01022981   IPI01021673   IPI01021515   IPI01021374   IPI01021193   IPI01022344   
Protein Interaction databases
DIP (DOE-UCLA)Q07020
IntAct (EBI)Q07020
FunCoupENSG00000063177
BioGRIDRPL18
STRING (EMBL)RPL18
ZODIACRPL18
Ontologies - Pathways
QuickGOQ07020
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Pathways : KEGGRibosome   
NDEx NetworkRPL18
Atlas of Cancer Signalling NetworkRPL18
Wikipedia pathwaysRPL18
Orthology - Evolution
OrthoDB6141
GeneTree (enSembl)ENSG00000063177
Phylogenetic Trees/Animal Genes : TreeFamRPL18
HOVERGENQ07020
HOGENOMQ07020
Homologs : HomoloGeneRPL18
Homology/Alignments : Family Browser (UCSC)RPL18
Gene fusions - Rearrangements
Fusion: TCGARPL18 ABCF1
Fusion: TCGARPL18 AR
Fusion: TCGARPL18 ZNF827
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL18
dbVarRPL18
ClinVarRPL18
1000_GenomesRPL18 
Exome Variant ServerRPL18
ExAC (Exome Aggregation Consortium)RPL18 (select the gene name)
Genetic variants : HAPMAP6141
Genomic Variants (DGV)RPL18 [DGVbeta]
DECIPHER (Syndromes)19:49118584-49122675  ENSG00000063177
CONAN: Copy Number AnalysisRPL18 
Mutations
ICGC Data PortalRPL18 
TCGA Data PortalRPL18 
Broad Tumor PortalRPL18
OASIS PortalRPL18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL18
DgiDB (Drug Gene Interaction Database)RPL18
DoCM (Curated mutations)RPL18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL18 (select a term)
intoGenRPL18
Cancer3DRPL18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604179   
Orphanet
MedgenRPL18
Genetic Testing Registry RPL18
NextProtQ07020 [Medical]
TSGene6141
GENETestsRPL18
Huge Navigator RPL18 [HugePedia]
snp3D : Map Gene to Disease6141
BioCentury BCIQRPL18
ClinGenRPL18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6141
Chemical/Pharm GKB GenePA34679
Clinical trialRPL18
Miscellaneous
canSAR (ICR)RPL18 (select the gene name)
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL18
EVEXRPL18
GoPubMedRPL18
iHOPRPL18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:39 CET 2017

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