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RPL18 (ribosomal protein L18)

Identity

Alias (NCBI)DBA18
L18
HGNC (Hugo) RPL18
HGNC Alias symbL18
HGNC Alias name60S ribosomal protein L18
LocusID (NCBI) 6141
Atlas_Id 72799
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48615331 and ends at 48619178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGA1 (6p21.31) / RPL18 (19q13.33)LA16c-306E5.1 () / RPL18 (19q13.33)PDIA4 (7q36.1) / RPL18 (19q13.33)
RPL18 (19q13.33) / ABCF1 (6p21.33)RPL18 (19q13.33) / AR (Xq12)RPL18 (19q13.33) / C15orf57 (15q15.1)
RPL18 (19q13.33) / CFB (6p21.33)RPL18 (19q13.33) / DNM2 (19p13.2)RPL18 (19q13.33) / EGR3 (8p21.3)
RPL18 (19q13.33) / FAM134C (17q21.2)RPL18 (19q13.33) / GANAB (11q12.3)RPL18 (19q13.33) / KCNIP1 (5q35.1)
RPL18 (19q13.33) / LGMN (14q32.12)RPL18 (19q13.33) / NDC80 (18p11.32)RPL18 (19q13.33) / NFE2L2 (2q31.2)
RPL18 (19q13.33) / SQSTM1 (5q35.3)RPL18 (19q13.33) / TAGLN (11q23.3)RPL18 (19q13.33) / ZNF827 (4q31.21)
RPL18P13 () / RPL18 (19q13.33)RPL18 ABCF1RPL18 AR
RPL18 ZNF827

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPL18   10310
Cards
Entrez_Gene (NCBI)RPL18    ribosomal protein L18
AliasesDBA18; L18
GeneCards (Weizmann)RPL18
Ensembl hg19 (Hinxton)ENSG00000063177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063177 [Gene_View]  ENSG00000063177 [Sequence]  chr19:48615331-48619178 [Contig_View]  RPL18 [Vega]
ICGC DataPortalENSG00000063177
TCGA cBioPortalRPL18
AceView (NCBI)RPL18
Genatlas (Paris)RPL18
SOURCE (Princeton)RPL18
Genetics Home Reference (NIH)RPL18
Genomic and cartography
GoldenPath hg38 (UCSC)RPL18  -     chr19:48615331-48619178 -  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL18  -     19q13.33   [Description]    (hg19-Feb_2009)
GoldenPathRPL18 - 19q13.33 [CytoView hg19]  RPL18 - 19q13.33 [CytoView hg38]
ImmunoBaseENSG00000063177
Genome Data Viewer NCBIRPL18 [Mapview hg19]  
OMIM604179   618310   
Gene and transcription
Genbank (Entrez)AI921565 AK026558 AK091257 AK293386 BC000374
RefSeq transcript (Entrez)NM_000979 NM_001270490
Consensus coding sequences : CCDS (NCBI)RPL18
Gene ExpressionRPL18 [ NCBI-GEO ]   RPL18 [ EBI - ARRAY_EXPRESS ]   RPL18 [ SEEK ]   RPL18 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL18 [ Firebrowse - Broad ]
GenevisibleExpression of RPL18 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6141
GTEX Portal (Tissue expression)RPL18
Human Protein AtlasENSG00000063177-RPL18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07020   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07020  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07020
PhosPhoSitePlusQ07020
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L18E (PS01106)   
Domains : Interpro (EBI)L18e/L15P_sf    Ribosomal_L18e    Ribosomal_L18e/L15P    Ribosomal_L18e_CS   
Domain families : Pfam (Sanger)Ribosomal_L18 (PF17135)   
Domain families : Pfam (NCBI)pfam17135   
Conserved Domain (NCBI)RPL18
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB Europe4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6W6L    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SuperfamilyQ07020
AlphaFold pdb e-kbQ07020   
Human Protein Atlas [tissue]ENSG00000063177-RPL18 [tissue]
HPRD16046
Protein Interaction databases
DIP (DOE-UCLA)Q07020
IntAct (EBI)Q07020
BioGRIDRPL18
STRING (EMBL)RPL18
ZODIACRPL18
Ontologies - Pathways
QuickGOQ07020
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  polysomal ribosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  endoplasmic reticulum  rough endoplasmic reticulum  cytosol  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  polysomal ribosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL18
Atlas of Cancer Signalling NetworkRPL18
Wikipedia pathwaysRPL18
Orthology - Evolution
OrthoDB6141
GeneTree (enSembl)ENSG00000063177
Phylogenetic Trees/Animal Genes : TreeFamRPL18
Homologs : HomoloGeneRPL18
Homology/Alignments : Family Browser (UCSC)RPL18
Gene fusions - Rearrangements
Fusion : QuiverRPL18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL18
dbVarRPL18
ClinVarRPL18
MonarchRPL18
1000_GenomesRPL18 
Exome Variant ServerRPL18
GNOMAD BrowserENSG00000063177
Varsome BrowserRPL18
ACMGRPL18 variants
VarityQ07020
Genomic Variants (DGV)RPL18 [DGVbeta]
DECIPHERRPL18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL18 
Mutations
ICGC Data PortalRPL18 
TCGA Data PortalRPL18 
Broad Tumor PortalRPL18
OASIS PortalRPL18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL18  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL18
Mutations and Diseases : HGMDRPL18
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPL18
DgiDB (Drug Gene Interaction Database)RPL18
DoCM (Curated mutations)RPL18
CIViC (Clinical Interpretations of Variants in Cancer)RPL18
Cancer3DRPL18
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604179    618310   
Orphanet
DisGeNETRPL18
MedgenRPL18
Genetic Testing Registry RPL18
NextProtQ07020 [Medical]
GENETestsRPL18
Target ValidationRPL18
Huge Navigator RPL18 [HugePedia]
ClinGenRPL18
Clinical trials, drugs, therapy
MyCancerGenomeRPL18
Protein Interactions : CTDRPL18
Pharm GKB GenePA34679
PharosQ07020
Clinical trialRPL18
Miscellaneous
canSAR (ICR)RPL18
HarmonizomeRPL18
DataMed IndexRPL18
Probes
Litterature
PubMed147 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:19:10 CEST 2021

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