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RPL18A (ribosomal protein L18a)

Identity

Alias_symbol (synonym)L18A
Other alias
HGNC (Hugo) RPL18A
LocusID (NCBI) 6142
Atlas_Id 72800
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 17859878 and ends at 17863324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPL18A (19p13.11) / EEF2 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL18A   10311
Cards
Entrez_Gene (NCBI)RPL18A  6142  ribosomal protein L18a
AliasesL18A
GeneCards (Weizmann)RPL18A
Ensembl hg19 (Hinxton)ENSG00000105640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105640 [Gene_View]  chr19:17859878-17863324 [Contig_View]  RPL18A [Vega]
ICGC DataPortalENSG00000105640
TCGA cBioPortalRPL18A
AceView (NCBI)RPL18A
Genatlas (Paris)RPL18A
WikiGenes6142
SOURCE (Princeton)RPL18A
Genetics Home Reference (NIH)RPL18A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL18A  -     chr19:17859878-17863324 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL18A  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblRPL18A - 19p13.11 [CytoView hg19]  RPL18A - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIRPL18A [Mapview hg19]  RPL18A [Mapview hg38]
OMIM604178   
Gene and transcription
Genbank (Entrez)AK222647 AK297323 AK297358 AK300809 AK311774
RefSeq transcript (Entrez)NM_000980
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL18A
Cluster EST : UnigeneHs.337766 [ NCBI ]
CGAP (NCI)Hs.337766
Alternative Splicing GalleryENSG00000105640
Gene ExpressionRPL18A [ NCBI-GEO ]   RPL18A [ EBI - ARRAY_EXPRESS ]   RPL18A [ SEEK ]   RPL18A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL18A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6142
GTEX Portal (Tissue expression)RPL18A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02543
Splice isoforms : SwissVarQ02543
PhosPhoSitePlusQ02543
Domains : Interpro (EBI)50S_L18Ae/Ribosomal_L18a/L20    Ribosomal_L18a//L18Ae/LX    Ribosomal_L18a/L20_eukaryotes   
Domain families : Pfam (Sanger)Ribosomal_L18A (PF01775)   
Domain families : Pfam (NCBI)pfam01775   
Conserved Domain (NCBI)RPL18A
DMDM Disease mutations6142
Blocks (Seattle)RPL18A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyQ02543
Human Protein AtlasENSG00000105640
Peptide AtlasQ02543
HPRD16045
IPIIPI00026202   IPI00847774   IPI00909746   IPI01012859   
Protein Interaction databases
DIP (DOE-UCLA)Q02543
IntAct (EBI)Q02543
FunCoupENSG00000105640
BioGRIDRPL18A
STRING (EMBL)RPL18A
ZODIACRPL18A
Ontologies - Pathways
QuickGOQ02543
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  response to antineoplastic agent  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  response to antineoplastic agent  
Pathways : KEGGRibosome   
NDEx NetworkRPL18A
Atlas of Cancer Signalling NetworkRPL18A
Wikipedia pathwaysRPL18A
Orthology - Evolution
OrthoDB6142
GeneTree (enSembl)ENSG00000105640
Phylogenetic Trees/Animal Genes : TreeFamRPL18A
HOVERGENQ02543
HOGENOMQ02543
Homologs : HomoloGeneRPL18A
Homology/Alignments : Family Browser (UCSC)RPL18A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL18A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL18A
dbVarRPL18A
ClinVarRPL18A
1000_GenomesRPL18A 
Exome Variant ServerRPL18A
ExAC (Exome Aggregation Consortium)RPL18A (select the gene name)
Genetic variants : HAPMAP6142
Genomic Variants (DGV)RPL18A [DGVbeta]
DECIPHERRPL18A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL18A 
Mutations
ICGC Data PortalRPL18A 
TCGA Data PortalRPL18A 
Broad Tumor PortalRPL18A
OASIS PortalRPL18A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL18A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL18A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL18A
DgiDB (Drug Gene Interaction Database)RPL18A
DoCM (Curated mutations)RPL18A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL18A (select a term)
intoGenRPL18A
Cancer3DRPL18A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604178   
Orphanet
MedgenRPL18A
Genetic Testing Registry RPL18A
NextProtQ02543 [Medical]
TSGene6142
GENETestsRPL18A
Target ValidationRPL18A
Huge Navigator RPL18A [HugePedia]
snp3D : Map Gene to Disease6142
BioCentury BCIQRPL18A
ClinGenRPL18A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6142
Chemical/Pharm GKB GenePA34680
Clinical trialRPL18A
Miscellaneous
canSAR (ICR)RPL18A (select the gene name)
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL18A
EVEXRPL18A
GoPubMedRPL18A
iHOPRPL18A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:15 CEST 2017

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