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RPL19 (ribosomal protein L19)

Identity

Alias_symbol (synonym)FLJ27452
MGC71997
DKFZp779D216
L19
Other alias
HGNC (Hugo) RPL19
LocusID (NCBI) 6143
Atlas_Id 46141
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 37356536 and ends at 37360980 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPL19 (17q12) / CCL11 (17q12)RPL19 (17q12) / KRT13 (17q21.2)RPL19 (17q12) / RPS16 (19q13.2)
RPL19 17q12 / CCL11 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL19   10312
Cards
Entrez_Gene (NCBI)RPL19  6143  ribosomal protein L19
AliasesL19
GeneCards (Weizmann)RPL19
Ensembl hg19 (Hinxton)ENSG00000108298 [Gene_View]  chr17:37356536-37360980 [Contig_View]  RPL19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000108298 [Gene_View]  chr17:37356536-37360980 [Contig_View]  RPL19 [Vega]
ICGC DataPortalENSG00000108298
TCGA cBioPortalRPL19
AceView (NCBI)RPL19
Genatlas (Paris)RPL19
WikiGenes6143
SOURCE (Princeton)RPL19
Genetics Home Reference (NIH)RPL19
Genomic and cartography
GoldenPath hg19 (UCSC)RPL19  -     chr17:37356536-37360980 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL19  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblRPL19 - 17q12 [CytoView hg19]  RPL19 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIRPL19 [Mapview hg19]  RPL19 [Mapview hg38]
OMIM180466   
Gene and transcription
Genbank (Entrez)AB019566 AB055766 AK130962 AK223082 AK311858
RefSeq transcript (Entrez)NM_000981
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)RPL19
Cluster EST : UnigeneHs.655411 [ NCBI ]
CGAP (NCI)Hs.655411
Alternative Splicing GalleryENSG00000108298
Gene ExpressionRPL19 [ NCBI-GEO ]   RPL19 [ EBI - ARRAY_EXPRESS ]   RPL19 [ SEEK ]   RPL19 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6143
GTEX Portal (Tissue expression)RPL19
Protein : pattern, domain, 3D structure
UniProt/SwissProtP84098   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP84098  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP84098
Splice isoforms : SwissVarP84098
PhosPhoSitePlusP84098
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L19E (PS00526)   
Domains : Interpro (EBI)Ribosomal_L19/L19e    Ribosomal_L19/L19e_CS    Ribosomal_L19/L19e_dom    Ribosomal_L19/L19e_dom1    Ribosomal_L19/L19e_dom3   
Domain families : Pfam (Sanger)Ribosomal_L19e (PF01280)   
Domain families : Pfam (NCBI)pfam01280   
Conserved Domain (NCBI)RPL19
DMDM Disease mutations6143
Blocks (Seattle)RPL19
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0   
SuperfamilyP84098
Human Protein AtlasENSG00000108298
Peptide AtlasP84098
HPRD01594
IPIIPI00025329   
Protein Interaction databases
DIP (DOE-UCLA)P84098
IntAct (EBI)P84098
FunCoupENSG00000108298
BioGRIDRPL19
STRING (EMBL)RPL19
ZODIACRPL19
Ontologies - Pathways
QuickGOP84098
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleolus  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  poly(A) RNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleolus  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL19
Atlas of Cancer Signalling NetworkRPL19
Wikipedia pathwaysRPL19
Orthology - Evolution
OrthoDB6143
GeneTree (enSembl)ENSG00000108298
Phylogenetic Trees/Animal Genes : TreeFamRPL19
HOVERGENP84098
HOGENOMP84098
Homologs : HomoloGeneRPL19
Homology/Alignments : Family Browser (UCSC)RPL19
Gene fusions - Rearrangements
Fusion : MitelmanRPL19/RPS16 [17q12/19q13.2]  
Fusion: TCGARPL19 17q12 CCL11 17q12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL19
dbVarRPL19
ClinVarRPL19
1000_GenomesRPL19 
Exome Variant ServerRPL19
ExAC (Exome Aggregation Consortium)RPL19 (select the gene name)
Genetic variants : HAPMAP6143
Genomic Variants (DGV)RPL19 [DGVbeta]
DECIPHER (Syndromes)17:37356536-37360980  ENSG00000108298
CONAN: Copy Number AnalysisRPL19 
Mutations
ICGC Data PortalRPL19 
TCGA Data PortalRPL19 
Broad Tumor PortalRPL19
OASIS PortalRPL19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL19
DgiDB (Drug Gene Interaction Database)RPL19
DoCM (Curated mutations)RPL19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL19 (select a term)
intoGenRPL19
Cancer3DRPL19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180466   
Orphanet
MedgenRPL19
Genetic Testing Registry RPL19
NextProtP84098 [Medical]
TSGene6143
GENETestsRPL19
Huge Navigator RPL19 [HugePedia]
snp3D : Map Gene to Disease6143
BioCentury BCIQRPL19
ClinGenRPL19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6143
Chemical/Pharm GKB GenePA34681
Clinical trialRPL19
Miscellaneous
canSAR (ICR)RPL19 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL19
EVEXRPL19
GoPubMedRPL19
iHOPRPL19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:25:34 CET 2017

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