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RPL21 (ribosomal protein L21)

Identity

Alias_symbol (synonym)L21
FLJ27458
MGC71252
MGC104274
MGC104275
DKFZp686C06101
Other aliasHYPT12
HGNC (Hugo) RPL21
LocusID (NCBI) 6144
Atlas_Id 72802
Location 10q26.12  [Link to chromosome band 10q26]
Location_base_pair Starts at 120354661 and ends at 120355223 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPL21 (13q12.2) / AHNAK (11q12.3)RPL21 (13q12.2) / ELF3 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL21   10313
Cards
Entrez_Gene (NCBI)RPL21  6144  ribosomal protein L21
AliasesHYPT12; L21
GeneCards (Weizmann)RPL21
Ensembl hg19 (Hinxton)ENSG00000122026 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122026 [Gene_View]  chr10:120354661-120355223 [Contig_View]  RPL21 [Vega]
ICGC DataPortalENSG00000122026
TCGA cBioPortalRPL21
AceView (NCBI)RPL21
Genatlas (Paris)RPL21
WikiGenes6144
SOURCE (Princeton)RPL21
Genetics Home Reference (NIH)RPL21
Genomic and cartography
GoldenPath hg38 (UCSC)RPL21  -     chr10:120354661-120355223 -  10q26.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL21  -     10q26.12   [Description]    (hg19-Feb_2009)
EnsemblRPL21 - 10q26.12 [CytoView hg19]  RPL21 - 10q26.12 [CytoView hg38]
Mapping of homologs : NCBIRPL21 [Mapview hg19]  RPL21 [Mapview hg38]
OMIM603636   615885   
Gene and transcription
Genbank (Entrez)AF086172 AK130968 AK311795 AY320407 BC001603
RefSeq transcript (Entrez)NM_000982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL21
Cluster EST : UnigeneHs.535873 [ NCBI ]
CGAP (NCI)Hs.535873
Alternative Splicing GalleryENSG00000122026
Gene ExpressionRPL21 [ NCBI-GEO ]   RPL21 [ EBI - ARRAY_EXPRESS ]   RPL21 [ SEEK ]   RPL21 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6144
GTEX Portal (Tissue expression)RPL21
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46778   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46778  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46778
Splice isoforms : SwissVarP46778
PhosPhoSitePlusP46778
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L21E (PS01171)   
Domains : Interpro (EBI)Ribosomal_L21e    Ribosomal_L21e_CS    Translation_prot_SH3-like   
Domain families : Pfam (Sanger)Ribosomal_L21e (PF01157)   
Domain families : Pfam (NCBI)pfam01157   
Conserved Domain (NCBI)RPL21
DMDM Disease mutations6144
Blocks (Seattle)RPL21
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP46778
Human Protein AtlasENSG00000122026
Peptide AtlasP46778
HPRD04700
Protein Interaction databases
DIP (DOE-UCLA)P46778
IntAct (EBI)P46778
FunCoupENSG00000122026
BioGRIDRPL21
STRING (EMBL)RPL21
ZODIACRPL21
Ontologies - Pathways
QuickGOP46778
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  
Pathways : KEGGRibosome   
NDEx NetworkRPL21
Atlas of Cancer Signalling NetworkRPL21
Wikipedia pathwaysRPL21
Orthology - Evolution
OrthoDB6144
GeneTree (enSembl)ENSG00000122026
Phylogenetic Trees/Animal Genes : TreeFamRPL21
HOVERGENP46778
HOGENOMP46778
Homologs : HomoloGeneRPL21
Homology/Alignments : Family Browser (UCSC)RPL21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL21
dbVarRPL21
ClinVarRPL21
1000_GenomesRPL21 
Exome Variant ServerRPL21
ExAC (Exome Aggregation Consortium)RPL21 (select the gene name)
Genetic variants : HAPMAP6144
Genomic Variants (DGV)RPL21 [DGVbeta]
DECIPHERRPL21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL21 
Mutations
ICGC Data PortalRPL21 
TCGA Data PortalRPL21 
Broad Tumor PortalRPL21
OASIS PortalRPL21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL21
DgiDB (Drug Gene Interaction Database)RPL21
DoCM (Curated mutations)RPL21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL21 (select a term)
intoGenRPL21
Cancer3DRPL21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603636    615885   
Orphanet10760   
MedgenRPL21
Genetic Testing Registry RPL21
NextProtP46778 [Medical]
TSGene6144
GENETestsRPL21
Target ValidationRPL21
Huge Navigator RPL21 [HugePedia]
snp3D : Map Gene to Disease6144
BioCentury BCIQRPL21
ClinGenRPL21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6144
Chemical/Pharm GKB GenePA34683
Clinical trialRPL21
Miscellaneous
canSAR (ICR)RPL21 (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL21
EVEXRPL21
GoPubMedRPL21
iHOPRPL21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:15 CEST 2017

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