Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPL22L1 (ribosomal protein L22-like 1)

Identity

Alias_namesribosomal protein L22-like 1
Other alias-
HGNC (Hugo) RPL22L1
LocusID (NCBI) 200916
Atlas_Id 72806
Location 3q26.2  [Link to chromosome band 3q26]
Location_base_pair Starts at 170582665 and ends at 170588045 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BSCL2 (11q12.3) / RPL22L1 (3q26.2)TMEM39A (3q13.33) / RPL22L1 (3q26.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL22L1   27610
Cards
Entrez_Gene (NCBI)RPL22L1  200916  ribosomal protein L22-like 1
Aliases
GeneCards (Weizmann)RPL22L1
Ensembl hg19 (Hinxton)ENSG00000163584 [Gene_View]  chr3:170582665-170588045 [Contig_View]  RPL22L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163584 [Gene_View]  chr3:170582665-170588045 [Contig_View]  RPL22L1 [Vega]
ICGC DataPortalENSG00000163584
TCGA cBioPortalRPL22L1
AceView (NCBI)RPL22L1
Genatlas (Paris)RPL22L1
WikiGenes200916
SOURCE (Princeton)RPL22L1
Genetics Home Reference (NIH)RPL22L1
Genomic and cartography
GoldenPath hg19 (UCSC)RPL22L1  -     chr3:170582665-170588045 -  3q26.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL22L1  -     3q26.2   [Description]    (hg38-Dec_2013)
EnsemblRPL22L1 - 3q26.2 [CytoView hg19]  RPL22L1 - 3q26.2 [CytoView hg38]
Mapping of homologs : NCBIRPL22L1 [Mapview hg19]  RPL22L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL110170 BC062731 BC107708 BM451642 CA449264
RefSeq transcript (Entrez)NM_001099645
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)RPL22L1
Cluster EST : UnigeneHs.380933 [ NCBI ]
CGAP (NCI)Hs.380933
Alternative Splicing GalleryENSG00000163584
Gene ExpressionRPL22L1 [ NCBI-GEO ]   RPL22L1 [ EBI - ARRAY_EXPRESS ]   RPL22L1 [ SEEK ]   RPL22L1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL22L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200916
GTEX Portal (Tissue expression)RPL22L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P5R6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P5R6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P5R6
Splice isoforms : SwissVarQ6P5R6
PhosPhoSitePlusQ6P5R6
Domains : Interpro (EBI)Ribosomal_L22e    RPL22L1   
Domain families : Pfam (Sanger)Ribosomal_L22e (PF01776)   
Domain families : Pfam (NCBI)pfam01776   
Conserved Domain (NCBI)RPL22L1
DMDM Disease mutations200916
Blocks (Seattle)RPL22L1
SuperfamilyQ6P5R6
Human Protein AtlasENSG00000163584
Peptide AtlasQ6P5R6
IPIIPI00856049   IPI00552388   IPI00945264   IPI00947070   IPI00946989   
Protein Interaction databases
DIP (DOE-UCLA)Q6P5R6
IntAct (EBI)Q6P5R6
FunCoupENSG00000163584
BioGRIDRPL22L1
STRING (EMBL)RPL22L1
ZODIACRPL22L1
Ontologies - Pathways
QuickGOQ6P5R6
Ontology : AmiGOstructural constituent of ribosome  ribosome  translation  
Ontology : EGO-EBIstructural constituent of ribosome  ribosome  translation  
Pathways : KEGGRibosome   
NDEx NetworkRPL22L1
Atlas of Cancer Signalling NetworkRPL22L1
Wikipedia pathwaysRPL22L1
Orthology - Evolution
OrthoDB200916
GeneTree (enSembl)ENSG00000163584
Phylogenetic Trees/Animal Genes : TreeFamRPL22L1
HOVERGENQ6P5R6
HOGENOMQ6P5R6
Homologs : HomoloGeneRPL22L1
Homology/Alignments : Family Browser (UCSC)RPL22L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL22L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL22L1
dbVarRPL22L1
ClinVarRPL22L1
1000_GenomesRPL22L1 
Exome Variant ServerRPL22L1
ExAC (Exome Aggregation Consortium)RPL22L1 (select the gene name)
Genetic variants : HAPMAP200916
Genomic Variants (DGV)RPL22L1 [DGVbeta]
DECIPHER (Syndromes)3:170582665-170588045  ENSG00000163584
CONAN: Copy Number AnalysisRPL22L1 
Mutations
ICGC Data PortalRPL22L1 
TCGA Data PortalRPL22L1 
Broad Tumor PortalRPL22L1
OASIS PortalRPL22L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL22L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL22L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL22L1
DgiDB (Drug Gene Interaction Database)RPL22L1
DoCM (Curated mutations)RPL22L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL22L1 (select a term)
intoGenRPL22L1
Cancer3DRPL22L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL22L1
Genetic Testing Registry RPL22L1
NextProtQ6P5R6 [Medical]
TSGene200916
GENETestsRPL22L1
Huge Navigator RPL22L1 [HugePedia]
snp3D : Map Gene to Disease200916
BioCentury BCIQRPL22L1
ClinGenRPL22L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200916
Chemical/Pharm GKB GenePA142671026
Clinical trialRPL22L1
Miscellaneous
canSAR (ICR)RPL22L1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL22L1
EVEXRPL22L1
GoPubMedRPL22L1
iHOPRPL22L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:41 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.