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RPL23 (ribosomal protein L23)

Identity

Alias (NCBI)L23
rpL17
HGNC (Hugo) RPL23
HGNC Alias symbrpL17
L23
LocusID (NCBI) 9349
Atlas_Id 42151
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38847860 and ends at 38853721 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGEF3 (3p14.3) / RPL23 (17q12)GAPDH (12p13.31) / RPL23 (17q12)JARID2 (6p22.3) / RPL23 (17q12)
PALLD (4q32.3) / RPL23 (17q12)PRR14 (16p11.2) / RPL23 (17q12)RPL23 (17q12) / ARL8B (3p26.1)
RPL23 (17q12) / CD164 (6q21)RPL23 (17q12) / CENPF (1q41)RPL23 (17q12) / DFFA (1p36.22)
RPL23 (17q12) / EDRF1 (10q26.13)RPL23 (17q12) / JARID2 (6p22.3)RPL23 (17q12) / MED30 (8q24.11)
RPL23 (17q12) / MRPL10 (17q21.32)RPL23 (17q12) / MUCL1 (12q13.2)SERPINA1 (14q32.13) / RPL23 (17q12)
SERPINA3 (14q32.13) / RPL23 (17q12)ZDHHC7 (16q24.1) / RPL23 (17q12)SERPINA3 14q32.13 / RPL23 17q12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPL23   10316
Cards
Entrez_Gene (NCBI)RPL23    ribosomal protein L23
AliasesL23; rpL17
GeneCards (Weizmann)RPL23
Ensembl hg19 (Hinxton)ENSG00000125691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125691 [Gene_View]  ENSG00000125691 [Sequence]  chr17:38847860-38853721 [Contig_View]  RPL23 [Vega]
ICGC DataPortalENSG00000125691
TCGA cBioPortalRPL23
AceView (NCBI)RPL23
Genatlas (Paris)RPL23
SOURCE (Princeton)RPL23
Genetics Home Reference (NIH)RPL23
Genomic and cartography
GoldenPath hg38 (UCSC)RPL23  -     chr17:38847860-38853721 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL23  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathRPL23 - 17q12 [CytoView hg19]  RPL23 - 17q12 [CytoView hg38]
ImmunoBaseENSG00000125691
Genome Data Viewer NCBIRPL23 [Mapview hg19]  
OMIM603662   
Gene and transcription
Genbank (Entrez)AK024749 AK129836 BC003518 BC034378 BC062716
RefSeq transcript (Entrez)NM_000978
Consensus coding sequences : CCDS (NCBI)RPL23
Gene ExpressionRPL23 [ NCBI-GEO ]   RPL23 [ EBI - ARRAY_EXPRESS ]   RPL23 [ SEEK ]   RPL23 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL23 [ Firebrowse - Broad ]
GenevisibleExpression of RPL23 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9349
GTEX Portal (Tissue expression)RPL23
Human Protein AtlasENSG00000125691-RPL23 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62829   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62829  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62829
PhosPhoSitePlusP62829
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L14 (PS00049)   
Domains : Interpro (EBI)Ribosomal_L14_sf    Ribosomal_L14P    Ribosomal_L14P_CS   
Domain families : Pfam (Sanger)Ribosomal_L14 (PF00238)   
Domain families : Pfam (NCBI)pfam00238   
Domain families : Smart (EMBL)Ribosomal_L14 (SM01374)  
Conserved Domain (NCBI)RPL23
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB Europe4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6L    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SuperfamilyP62829
AlphaFold pdb e-kbP62829   
Human Protein Atlas [tissue]ENSG00000125691-RPL23 [tissue]
HPRD04716
Protein Interaction databases
DIP (DOE-UCLA)P62829
IntAct (EBI)P62829
BioGRIDRPL23
STRING (EMBL)RPL23
ZODIACRPL23
Ontologies - Pathways
QuickGOP62829
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  transcription coactivator binding  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  ribosomal protein import into nucleus  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell population proliferation  positive regulation of gene expression  postsynaptic density  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  ubiquitin protein ligase binding  protein-DNA complex disassembly  protein-containing complex  protein-containing complex  protein stabilization  regulation of cell cycle  extracellular exosome  large ribosomal subunit rRNA binding  cellular response to actinomycin D  positive regulation of signal transduction by p53 class mediator  negative regulation of ubiquitin protein ligase activity  ubiquitin ligase inhibitor activity  negative regulation of ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  transcription coactivator binding  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleoplasm  nucleolus  cytoplasm  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  ribosomal protein import into nucleus  SRP-dependent cotranslational protein targeting to membrane  positive regulation of cell population proliferation  positive regulation of gene expression  postsynaptic density  membrane  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  ubiquitin protein ligase binding  protein-DNA complex disassembly  protein-containing complex  protein-containing complex  protein stabilization  regulation of cell cycle  extracellular exosome  large ribosomal subunit rRNA binding  cellular response to actinomycin D  positive regulation of signal transduction by p53 class mediator  negative regulation of ubiquitin protein ligase activity  ubiquitin ligase inhibitor activity  negative regulation of ubiquitin-dependent protein catabolic process  
Pathways : KEGGRibosome   
NDEx NetworkRPL23
Atlas of Cancer Signalling NetworkRPL23
Wikipedia pathwaysRPL23
Orthology - Evolution
OrthoDB9349
GeneTree (enSembl)ENSG00000125691
Phylogenetic Trees/Animal Genes : TreeFamRPL23
Homologs : HomoloGeneRPL23
Homology/Alignments : Family Browser (UCSC)RPL23
Gene fusions - Rearrangements
Fusion : MitelmanRPL23/MUCL1 [17q12/12q13.2]  
Fusion : MitelmanSERPINA3/RPL23 [14q32.13/17q12]  
Fusion : QuiverRPL23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL23
dbVarRPL23
ClinVarRPL23
MonarchRPL23
1000_GenomesRPL23 
Exome Variant ServerRPL23
GNOMAD BrowserENSG00000125691
Varsome BrowserRPL23
ACMGRPL23 variants
VarityP62829
Genomic Variants (DGV)RPL23 [DGVbeta]
DECIPHERRPL23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL23 
Mutations
ICGC Data PortalRPL23 
TCGA Data PortalRPL23 
Broad Tumor PortalRPL23
OASIS PortalRPL23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL23  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL23
Mutations and Diseases : HGMDRPL23
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPL23
DgiDB (Drug Gene Interaction Database)RPL23
DoCM (Curated mutations)RPL23
CIViC (Clinical Interpretations of Variants in Cancer)RPL23
Cancer3DRPL23
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603662   
Orphanet
DisGeNETRPL23
MedgenRPL23
Genetic Testing Registry RPL23
NextProtP62829 [Medical]
GENETestsRPL23
Target ValidationRPL23
Huge Navigator RPL23 [HugePedia]
ClinGenRPL23
Clinical trials, drugs, therapy
MyCancerGenomeRPL23
Protein Interactions : CTDRPL23
Pharm GKB GenePA34690
PharosP62829
Clinical trialRPL23
Miscellaneous
canSAR (ICR)RPL23
HarmonizomeRPL23
DataMed IndexRPL23
Probes
Litterature
PubMed155 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:28 CEST 2021

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