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RPL23AP87 (ribosomal protein L23a pseudogene 87)

Identity

Other alias-
HGNC (Hugo) RPL23AP87
LocusID (NCBI) 388574
Atlas_Id 77244
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 83226897 and ends at 83240804 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL23AP87   51578
Cards
Entrez_Gene (NCBI)RPL23AP87  388574  ribosomal protein L23a pseudogene 87
Aliases
GeneCards (Weizmann)RPL23AP87
Ensembl hg19 (Hinxton)ENSG00000232938 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232938 [Gene_View]  chr17:83226897-83240804 [Contig_View]  RPL23AP87 [Vega]
ICGC DataPortalENSG00000232938
TCGA cBioPortalRPL23AP87
AceView (NCBI)RPL23AP87
Genatlas (Paris)RPL23AP87
WikiGenes388574
SOURCE (Princeton)RPL23AP87
Genetics Home Reference (NIH)RPL23AP87
Genomic and cartography
GoldenPath hg38 (UCSC)RPL23AP87  -     chr17:83226897-83240804 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL23AP87  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblRPL23AP87 - 17q25.3 [CytoView hg19]  RPL23AP87 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIRPL23AP87 [Mapview hg19]  RPL23AP87 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK125669
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL23AP87
Cluster EST : UnigeneHs.546918 [ NCBI ]
CGAP (NCI)Hs.546918
Alternative Splicing GalleryENSG00000232938
Gene ExpressionRPL23AP87 [ NCBI-GEO ]   RPL23AP87 [ EBI - ARRAY_EXPRESS ]   RPL23AP87 [ SEEK ]   RPL23AP87 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL23AP87 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388574
GTEX Portal (Tissue expression)RPL23AP87
Human Protein AtlasENSG00000232938-RPL23AP87 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)RPL23AP87
DMDM Disease mutations388574
Blocks (Seattle)RPL23AP87
Human Protein Atlas [tissue]ENSG00000232938-RPL23AP87 [tissue]
IPIIPI00939476   
Protein Interaction databases
FunCoupENSG00000232938
BioGRIDRPL23AP87
STRING (EMBL)RPL23AP87
ZODIACRPL23AP87
Ontologies - Pathways
Huge Navigator RPL23AP87 [HugePedia]
snp3D : Map Gene to Disease388574
BioCentury BCIQRPL23AP87
ClinGenRPL23AP87
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388574
Clinical trialRPL23AP87
Miscellaneous
canSAR (ICR)RPL23AP87 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL23AP87
EVEXRPL23AP87
GoPubMedRPL23AP87
iHOPRPL23AP87
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:40 CET 2017

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