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RPL24 (ribosomal protein L24)

Identity

Alias_symbol (synonym)L24
Other aliasHEL-S-310
HGNC (Hugo) RPL24
LocusID (NCBI) 6152
Atlas_Id 55391
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 101681090 and ends at 101686719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNB1 (1p36.33) / RPL24 (3q12.3)HNRNPU (1q44) / RPL24 (3q12.3)SLC36A2 (5q33.1) / RPL24 (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL24   10325
Cards
Entrez_Gene (NCBI)RPL24  6152  ribosomal protein L24
AliasesHEL-S-310; L24
GeneCards (Weizmann)RPL24
Ensembl hg19 (Hinxton)ENSG00000114391 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000114391 [Gene_View]  chr3:101681090-101686719 [Contig_View]  RPL24 [Vega]
ICGC DataPortalENSG00000114391
TCGA cBioPortalRPL24
AceView (NCBI)RPL24
Genatlas (Paris)RPL24
WikiGenes6152
SOURCE (Princeton)RPL24
Genetics Home Reference (NIH)RPL24
Genomic and cartography
GoldenPath hg38 (UCSC)RPL24  -     chr3:101681090-101686719 -  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL24  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblRPL24 - 3q12.3 [CytoView hg19]  RPL24 - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBIRPL24 [Mapview hg19]  RPL24 [Mapview hg38]
OMIM604180   
Gene and transcription
Genbank (Entrez)AK311992 BC000690 BC070193 BU754101 CD513036
RefSeq transcript (Entrez)NM_000986
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL24
Cluster EST : UnigeneHs.649475 [ NCBI ]
CGAP (NCI)Hs.649475
Alternative Splicing GalleryENSG00000114391
Gene ExpressionRPL24 [ NCBI-GEO ]   RPL24 [ EBI - ARRAY_EXPRESS ]   RPL24 [ SEEK ]   RPL24 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6152
GTEX Portal (Tissue expression)RPL24
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83731   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83731  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83731
Splice isoforms : SwissVarP83731
PhosPhoSitePlusP83731
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L24E (PS01073)   
Domains : Interpro (EBI)Ribosomal_L24e-rel    Ribosomal_L24e_CS    TRASH_dom   
Domain families : Pfam (Sanger)Ribosomal_L24e (PF01246)   
Domain families : Pfam (NCBI)pfam01246   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)RPL24
DMDM Disease mutations6152
Blocks (Seattle)RPL24
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5T2C   
SuperfamilyP83731
Human Protein AtlasENSG00000114391
Peptide AtlasP83731
HPRD10365
IPIIPI00306332   IPI00791426   IPI00946221   
Protein Interaction databases
DIP (DOE-UCLA)P83731
IntAct (EBI)P83731
FunCoupENSG00000114391
BioGRIDRPL24
STRING (EMBL)RPL24
ZODIACRPL24
Ontologies - Pathways
QuickGOP83731
Ontology : AmiGOribosomal large subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  mitotic cell cycle checkpoint  exit from mitosis  membrane  viral transcription  optic nerve development  cytosolic large ribosomal subunit  retinal ganglion cell axon guidance  cadherin binding  retina development in camera-type eye  extracellular exosome  assembly of large subunit precursor of preribosome  
Ontology : EGO-EBIribosomal large subunit assembly  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  mitotic cell cycle checkpoint  exit from mitosis  membrane  viral transcription  optic nerve development  cytosolic large ribosomal subunit  retinal ganglion cell axon guidance  cadherin binding  retina development in camera-type eye  extracellular exosome  assembly of large subunit precursor of preribosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL24
Atlas of Cancer Signalling NetworkRPL24
Wikipedia pathwaysRPL24
Orthology - Evolution
OrthoDB6152
GeneTree (enSembl)ENSG00000114391
Phylogenetic Trees/Animal Genes : TreeFamRPL24
HOVERGENP83731
HOGENOMP83731
Homologs : HomoloGeneRPL24
Homology/Alignments : Family Browser (UCSC)RPL24
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL24
dbVarRPL24
ClinVarRPL24
1000_GenomesRPL24 
Exome Variant ServerRPL24
ExAC (Exome Aggregation Consortium)RPL24 (select the gene name)
Genetic variants : HAPMAP6152
Genomic Variants (DGV)RPL24 [DGVbeta]
DECIPHERRPL24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL24 
Mutations
ICGC Data PortalRPL24 
TCGA Data PortalRPL24 
Broad Tumor PortalRPL24
OASIS PortalRPL24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL24  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL24
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL24
DgiDB (Drug Gene Interaction Database)RPL24
DoCM (Curated mutations)RPL24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL24 (select a term)
intoGenRPL24
Cancer3DRPL24(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604180   
Orphanet
MedgenRPL24
Genetic Testing Registry RPL24
NextProtP83731 [Medical]
TSGene6152
GENETestsRPL24
Huge Navigator RPL24 [HugePedia]
snp3D : Map Gene to Disease6152
BioCentury BCIQRPL24
ClinGenRPL24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6152
Chemical/Pharm GKB GenePA34701
Clinical trialRPL24
Miscellaneous
canSAR (ICR)RPL24 (select the gene name)
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL24
EVEXRPL24
GoPubMedRPL24
iHOPRPL24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:31 CEST 2017

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