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RPL27 (ribosomal protein L27)

Identity

Alias_symbol (synonym)L27
Other aliasDBA16
HGNC (Hugo) RPL27
LocusID (NCBI) 6155
Atlas_Id 42152
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 42998391 and ends at 43002954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
OXA1L (14q11.2) / RPL27 (17q21.31)RPL27 (17q21.31) / BECN1 (17q21.31)RPL27 (17q21.31) / C1orf210 (1p34.2)
RPL27 (17q21.31) / CASP12 (11q22.3)RPL27 (17q21.31) / KRT13 (17q21.2)RPL27 (17q21.31) / NME2 (17q21.33)
RPL27 (17q21.31) / RASIP1 (19q13.33)RPL27 (17q21.31) / RPL27 (17q21.31)RPS6 (9p22.1) / RPL27 (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL27   10328
Cards
Entrez_Gene (NCBI)RPL27  6155  ribosomal protein L27
AliasesDBA16; L27
GeneCards (Weizmann)RPL27
Ensembl hg19 (Hinxton)ENSG00000131469 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131469 [Gene_View]  chr17:42998391-43002954 [Contig_View]  RPL27 [Vega]
ICGC DataPortalENSG00000131469
TCGA cBioPortalRPL27
AceView (NCBI)RPL27
Genatlas (Paris)RPL27
WikiGenes6155
SOURCE (Princeton)RPL27
Genetics Home Reference (NIH)RPL27
Genomic and cartography
GoldenPath hg38 (UCSC)RPL27  -     chr17:42998391-43002954 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL27  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblRPL27 - 17q21.31 [CytoView hg19]  RPL27 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIRPL27 [Mapview hg19]  RPL27 [Mapview hg38]
OMIM607526   617408   
Gene and transcription
Genbank (Entrez)AK124148 AK311792 AV712491 AW404176 BC001700
RefSeq transcript (Entrez)NM_000988 NM_001349921 NM_001349922
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL27
Cluster EST : UnigeneHs.731595 [ NCBI ]
CGAP (NCI)Hs.731595
Alternative Splicing GalleryENSG00000131469
Gene ExpressionRPL27 [ NCBI-GEO ]   RPL27 [ EBI - ARRAY_EXPRESS ]   RPL27 [ SEEK ]   RPL27 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6155
GTEX Portal (Tissue expression)RPL27
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61353   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61353  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61353
Splice isoforms : SwissVarP61353
PhosPhoSitePlusP61353
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L27E (PS01107)   
Domains : Interpro (EBI)KOW    Rib_L2_dom2    Ribosomal_L27e    Ribosomal_L27e_CS    Translation_prot_SH3-like   
Domain families : Pfam (Sanger)KOW (PF00467)    Ribosomal_L27e (PF01777)   
Domain families : Pfam (NCBI)pfam00467    pfam01777   
Domain families : Smart (EMBL)KOW (SM00739)  
Domain structure : Prodom (Prabi Lyon)Ribosomal_L27e (PD009396)   
Conserved Domain (NCBI)RPL27
DMDM Disease mutations6155
Blocks (Seattle)RPL27
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP61353
Human Protein AtlasENSG00000131469
Peptide AtlasP61353
HPRD09602
IPIIPI00219155   
Protein Interaction databases
DIP (DOE-UCLA)P61353
IntAct (EBI)P61353
FunCoupENSG00000131469
BioGRIDRPL27
STRING (EMBL)RPL27
ZODIACRPL27
Ontologies - Pathways
QuickGOP61353
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  extracellular matrix  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleus  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  extracellular matrix  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL27
Atlas of Cancer Signalling NetworkRPL27
Wikipedia pathwaysRPL27
Orthology - Evolution
OrthoDB6155
GeneTree (enSembl)ENSG00000131469
Phylogenetic Trees/Animal Genes : TreeFamRPL27
HOVERGENP61353
HOGENOMP61353
Homologs : HomoloGeneRPL27
Homology/Alignments : Family Browser (UCSC)RPL27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL27
dbVarRPL27
ClinVarRPL27
1000_GenomesRPL27 
Exome Variant ServerRPL27
ExAC (Exome Aggregation Consortium)RPL27 (select the gene name)
Genetic variants : HAPMAP6155
Genomic Variants (DGV)RPL27 [DGVbeta]
DECIPHERRPL27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL27 
Mutations
ICGC Data PortalRPL27 
TCGA Data PortalRPL27 
Broad Tumor PortalRPL27
OASIS PortalRPL27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL27
DgiDB (Drug Gene Interaction Database)RPL27
DoCM (Curated mutations)RPL27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL27 (select a term)
intoGenRPL27
Cancer3DRPL27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607526    617408   
Orphanet
MedgenRPL27
Genetic Testing Registry RPL27
NextProtP61353 [Medical]
TSGene6155
GENETestsRPL27
Target ValidationRPL27
Huge Navigator RPL27 [HugePedia]
snp3D : Map Gene to Disease6155
BioCentury BCIQRPL27
ClinGenRPL27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6155
Chemical/Pharm GKB GenePA34707
Clinical trialRPL27
Miscellaneous
canSAR (ICR)RPL27 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL27
EVEXRPL27
GoPubMedRPL27
iHOPRPL27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:53:47 CEST 2017

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