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RPL28 (ribosomal protein L28)

Identity

Alias_symbol (synonym)FLJ43307
L28
Other alias
HGNC (Hugo) RPL28
LocusID (NCBI) 6158
Atlas_Id 42154
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 55385932 and ends at 55392083 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANGPTL4 (19p13.2) / RPL28 (19q13.42)BCYRN1 (Xq13.1) / RPL28 (19q13.42)CBWD2 (2q13) / RPL28 (19q13.42)
DDX1 (2p24.3) / RPL28 (19q13.42)RPL28 (19q13.42) / C22orf23 (22q13.1)RPL28 (19q13.42) / EPB41L1 (20q11.23)
RPL28 (19q13.42) / GAPDH (12p13.31)RPL28 (19q13.42) / GLB1 (3p22.3)RPL28 (19q13.42) / LASP1 (17q12)
RPL28 (19q13.42) / RPL28 (19q13.42)RPL28 (19q13.42) / TPI1 (12p13.31)RPL28 (19q13.42) / ZNF804B (7q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL28   10330
Cards
Entrez_Gene (NCBI)RPL28  6158  ribosomal protein L28
AliasesL28
GeneCards (Weizmann)RPL28
Ensembl hg19 (Hinxton)ENSG00000108107 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108107 [Gene_View]  chr19:55385932-55392083 [Contig_View]  RPL28 [Vega]
ICGC DataPortalENSG00000108107
TCGA cBioPortalRPL28
AceView (NCBI)RPL28
Genatlas (Paris)RPL28
WikiGenes6158
SOURCE (Princeton)RPL28
Genetics Home Reference (NIH)RPL28
Genomic and cartography
GoldenPath hg38 (UCSC)RPL28  -     chr19:55385932-55392083 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL28  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblRPL28 - 19q13.42 [CytoView hg19]  RPL28 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIRPL28 [Mapview hg19]  RPL28 [Mapview hg38]
OMIM603638   
Gene and transcription
Genbank (Entrez)AB209627 AK025866 AK096870 AK125297 AK293736
RefSeq transcript (Entrez)NM_000991 NM_001136134 NM_001136135 NM_001136136 NM_001136137
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL28
Cluster EST : UnigeneHs.652114 [ NCBI ]
CGAP (NCI)Hs.652114
Alternative Splicing GalleryENSG00000108107
Gene ExpressionRPL28 [ NCBI-GEO ]   RPL28 [ EBI - ARRAY_EXPRESS ]   RPL28 [ SEEK ]   RPL28 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6158
GTEX Portal (Tissue expression)RPL28
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46779   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46779  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46779
Splice isoforms : SwissVarP46779
PhosPhoSitePlusP46779
Domains : Interpro (EBI)L28e/Mak16    Ribosomal_L28e   
Domain families : Pfam (Sanger)Ribosomal_L28e (PF01778)   
Domain families : Pfam (NCBI)pfam01778   
Conserved Domain (NCBI)RPL28
DMDM Disease mutations6158
Blocks (Seattle)RPL28
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP46779
Human Protein AtlasENSG00000108107
Peptide AtlasP46779
HPRD04702
IPIIPI00182533   IPI00910727   IPI00914529   IPI00816097   IPI00914543   IPI00985019   
Protein Interaction databases
DIP (DOE-UCLA)P46779
IntAct (EBI)P46779
FunCoupENSG00000108107
BioGRIDRPL28
STRING (EMBL)RPL28
ZODIACRPL28
Ontologies - Pathways
QuickGOP46779
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  dendrite  cytoplasmic ribonucleoprotein granule  cell body  extracellular exosome  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  dendrite  cytoplasmic ribonucleoprotein granule  cell body  extracellular exosome  regulation of mitophagy  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGRibosome   
NDEx NetworkRPL28
Atlas of Cancer Signalling NetworkRPL28
Wikipedia pathwaysRPL28
Orthology - Evolution
OrthoDB6158
GeneTree (enSembl)ENSG00000108107
Phylogenetic Trees/Animal Genes : TreeFamRPL28
HOVERGENP46779
HOGENOMP46779
Homologs : HomoloGeneRPL28
Homology/Alignments : Family Browser (UCSC)RPL28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL28
dbVarRPL28
ClinVarRPL28
1000_GenomesRPL28 
Exome Variant ServerRPL28
ExAC (Exome Aggregation Consortium)RPL28 (select the gene name)
Genetic variants : HAPMAP6158
Genomic Variants (DGV)RPL28 [DGVbeta]
DECIPHERRPL28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL28 
Mutations
ICGC Data PortalRPL28 
TCGA Data PortalRPL28 
Broad Tumor PortalRPL28
OASIS PortalRPL28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL28
DgiDB (Drug Gene Interaction Database)RPL28
DoCM (Curated mutations)RPL28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL28 (select a term)
intoGenRPL28
Cancer3DRPL28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603638   
Orphanet
MedgenRPL28
Genetic Testing Registry RPL28
NextProtP46779 [Medical]
TSGene6158
GENETestsRPL28
Target ValidationRPL28
Huge Navigator RPL28 [HugePedia]
snp3D : Map Gene to Disease6158
BioCentury BCIQRPL28
ClinGenRPL28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6158
Chemical/Pharm GKB GenePA34710
Clinical trialRPL28
Miscellaneous
canSAR (ICR)RPL28 (select the gene name)
Probes
Litterature
PubMed71 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL28
EVEXRPL28
GoPubMedRPL28
iHOPRPL28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:48 CEST 2017

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