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RPL29 (ribosomal protein L29)

Identity

Alias_namesRPL29P10
ribosomal protein L29 pseudogene 10
Alias_symbol (synonym)HIP
HUMRPL29
L29
Other aliasRPL29_3_370
HGNC (Hugo) RPL29
LocusID (NCBI) 6159
Atlas_Id 42155
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51993628 and ends at 51995942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD74 (5q32) / RPL29 (3p21.2)RPL29 (3p21.2) / IFI44L (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL29   10331
Cards
Entrez_Gene (NCBI)RPL29  6159  ribosomal protein L29
AliasesHIP; HUMRPL29; L29; RPL29P10; 
RPL29_3_370
GeneCards (Weizmann)RPL29
Ensembl hg19 (Hinxton)ENSG00000162244 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162244 [Gene_View]  chr3:51993628-51995942 [Contig_View]  RPL29 [Vega]
ICGC DataPortalENSG00000162244
TCGA cBioPortalRPL29
AceView (NCBI)RPL29
Genatlas (Paris)RPL29
WikiGenes6159
SOURCE (Princeton)RPL29
Genetics Home Reference (NIH)RPL29
Genomic and cartography
GoldenPath hg38 (UCSC)RPL29  -     chr3:51993628-51995942 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL29  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblRPL29 - 3p21.2 [CytoView hg19]  RPL29 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIRPL29 [Mapview hg19]  RPL29 [Mapview hg38]
OMIM601832   
Gene and transcription
Genbank (Entrez)AK289538 AK311884 BC008926 BC018943 BC070190
RefSeq transcript (Entrez)NM_000992
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL29
Cluster EST : UnigeneHs.425125 [ NCBI ]
CGAP (NCI)Hs.425125
Alternative Splicing GalleryENSG00000162244
Gene ExpressionRPL29 [ NCBI-GEO ]   RPL29 [ EBI - ARRAY_EXPRESS ]   RPL29 [ SEEK ]   RPL29 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6159
GTEX Portal (Tissue expression)RPL29
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47914   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47914  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47914
Splice isoforms : SwissVarP47914
PhosPhoSitePlusP47914
Domains : Interpro (EBI)Ribosomal_L29e   
Domain families : Pfam (Sanger)Ribosomal_L29e (PF01779)   
Domain families : Pfam (NCBI)pfam01779   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L29e (PD010314)   
Conserved Domain (NCBI)RPL29
DMDM Disease mutations6159
Blocks (Seattle)RPL29
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP47914
Human Protein AtlasENSG00000162244
Peptide AtlasP47914
HPRD03495
IPIIPI00419919   IPI00798109   IPI00945894   
Protein Interaction databases
DIP (DOE-UCLA)P47914
IntAct (EBI)P47914
FunCoupENSG00000162244
BioGRIDRPL29
STRING (EMBL)RPL29
ZODIACRPL29
Ontologies - Pathways
QuickGOP47914
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  embryo implantation  heparin binding  membrane  viral transcription  cytosolic large ribosomal subunit  cadherin binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  embryo implantation  heparin binding  membrane  viral transcription  cytosolic large ribosomal subunit  cadherin binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL29
Atlas of Cancer Signalling NetworkRPL29
Wikipedia pathwaysRPL29
Orthology - Evolution
OrthoDB6159
GeneTree (enSembl)ENSG00000162244
Phylogenetic Trees/Animal Genes : TreeFamRPL29
HOVERGENP47914
HOGENOMP47914
Homologs : HomoloGeneRPL29
Homology/Alignments : Family Browser (UCSC)RPL29
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL29
dbVarRPL29
ClinVarRPL29
1000_GenomesRPL29 
Exome Variant ServerRPL29
ExAC (Exome Aggregation Consortium)RPL29 (select the gene name)
Genetic variants : HAPMAP6159
Genomic Variants (DGV)RPL29 [DGVbeta]
DECIPHERRPL29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL29 
Mutations
ICGC Data PortalRPL29 
TCGA Data PortalRPL29 
Broad Tumor PortalRPL29
OASIS PortalRPL29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL29
DgiDB (Drug Gene Interaction Database)RPL29
DoCM (Curated mutations)RPL29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL29 (select a term)
intoGenRPL29
Cancer3DRPL29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601832   
Orphanet
MedgenRPL29
Genetic Testing Registry RPL29
NextProtP47914 [Medical]
TSGene6159
GENETestsRPL29
Target ValidationRPL29
Huge Navigator RPL29 [HugePedia]
snp3D : Map Gene to Disease6159
BioCentury BCIQRPL29
ClinGenRPL29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6159
Chemical/Pharm GKB GenePA34711
Clinical trialRPL29
Miscellaneous
canSAR (ICR)RPL29 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL29
EVEXRPL29
GoPubMedRPL29
iHOPRPL29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:29:22 CEST 2017

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