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RPL30 (ribosomal protein L30)

Identity

Alias_symbol (synonym)L30
Other alias
HGNC (Hugo) RPL30
LocusID (NCBI) 6156
Atlas_Id 72818
Location 8q22.2  [Link to chromosome band 8q22]
Location_base_pair Starts at 99053938 and ends at 99057818 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNA1E (1q25.3) / RPL30 (8q22.2)MEGF11 (15q22.31) / RPL30 (8q22.2)NOP58 (2q33.1) / RPL30 (8q22.2)
RPL30 (8q22.2) / EEF1D (8q24.3)RPL30 (8q22.2) / KCTD18 (2q33.1)RPL30 (8q22.2) / PRKCZ (1p36.33)
RPL30 (8q22.2) / REG4 (1p12)RPL30 (8q22.2) / RPL30 (8q22.2)RPL30 (8q22.2) / TBC1D5 (3p24.3)
TP53BP2 (1q41) / RPL30 (8q22.2)TTC37 (5q15) / RPL30 (8q22.2)cytochrome_b () / RPL30 (8q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL30   10333
Cards
Entrez_Gene (NCBI)RPL30  6156  ribosomal protein L30
AliasesL30
GeneCards (Weizmann)RPL30
Ensembl hg19 (Hinxton)ENSG00000156482 [Gene_View]  chr8:99053938-99057818 [Contig_View]  RPL30 [Vega]
Ensembl hg38 (Hinxton)ENSG00000156482 [Gene_View]  chr8:99053938-99057818 [Contig_View]  RPL30 [Vega]
ICGC DataPortalENSG00000156482
TCGA cBioPortalRPL30
AceView (NCBI)RPL30
Genatlas (Paris)RPL30
WikiGenes6156
SOURCE (Princeton)RPL30
Genetics Home Reference (NIH)RPL30
Genomic and cartography
GoldenPath hg19 (UCSC)RPL30  -     chr8:99053938-99057818 -  8q22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL30  -     8q22.2   [Description]    (hg38-Dec_2013)
EnsemblRPL30 - 8q22.2 [CytoView hg19]  RPL30 - 8q22.2 [CytoView hg38]
Mapping of homologs : NCBIRPL30 [Mapview hg19]  RPL30 [Mapview hg38]
OMIM180467   
Gene and transcription
Genbank (Entrez)AK308890 AK312102 AL049968 BC032700 BC095426
RefSeq transcript (Entrez)NM_000989
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)RPL30
Cluster EST : UnigeneHs.400295 [ NCBI ]
CGAP (NCI)Hs.400295
Alternative Splicing GalleryENSG00000156482
Gene ExpressionRPL30 [ NCBI-GEO ]   RPL30 [ EBI - ARRAY_EXPRESS ]   RPL30 [ SEEK ]   RPL30 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6156
GTEX Portal (Tissue expression)RPL30
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62888   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62888  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62888
Splice isoforms : SwissVarP62888
PhosPhoSitePlusP62888
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L30E_1 (PS00709)    RIBOSOMAL_L30E_2 (PS00993)   
Domains : Interpro (EBI)L30e-like    Ribosomal_L30e    Ribosomal_L30e_CS    Ribosomal_L7Ae/L30e/S12e/Gad45   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)RPL30
DMDM Disease mutations6156
Blocks (Seattle)RPL30
PDB (SRS)3VI6    4V6X   
PDB (PDBSum)3VI6    4V6X   
PDB (IMB)3VI6    4V6X   
PDB (RSDB)3VI6    4V6X   
Structural Biology KnowledgeBase3VI6    4V6X   
SCOP (Structural Classification of Proteins)3VI6    4V6X   
CATH (Classification of proteins structures)3VI6    4V6X   
SuperfamilyP62888
Human Protein AtlasENSG00000156482
Peptide AtlasP62888
HPRD01595
IPIIPI00219156   IPI00983316   IPI00794121   IPI00794745   IPI00790695   
Protein Interaction databases
DIP (DOE-UCLA)P62888
IntAct (EBI)P62888
FunCoupENSG00000156482
BioGRIDRPL30
STRING (EMBL)RPL30
ZODIACRPL30
Ontologies - Pathways
QuickGOP62888
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL30
Atlas of Cancer Signalling NetworkRPL30
Wikipedia pathwaysRPL30
Orthology - Evolution
OrthoDB6156
GeneTree (enSembl)ENSG00000156482
Phylogenetic Trees/Animal Genes : TreeFamRPL30
HOVERGENP62888
HOGENOMP62888
Homologs : HomoloGeneRPL30
Homology/Alignments : Family Browser (UCSC)RPL30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL30
dbVarRPL30
ClinVarRPL30
1000_GenomesRPL30 
Exome Variant ServerRPL30
ExAC (Exome Aggregation Consortium)RPL30 (select the gene name)
Genetic variants : HAPMAP6156
Genomic Variants (DGV)RPL30 [DGVbeta]
DECIPHER (Syndromes)8:99053938-99057818  ENSG00000156482
CONAN: Copy Number AnalysisRPL30 
Mutations
ICGC Data PortalRPL30 
TCGA Data PortalRPL30 
Broad Tumor PortalRPL30
OASIS PortalRPL30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL30
DgiDB (Drug Gene Interaction Database)RPL30
DoCM (Curated mutations)RPL30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL30 (select a term)
intoGenRPL30
Cancer3DRPL30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180467   
Orphanet
MedgenRPL30
Genetic Testing Registry RPL30
NextProtP62888 [Medical]
TSGene6156
GENETestsRPL30
Huge Navigator RPL30 [HugePedia]
snp3D : Map Gene to Disease6156
BioCentury BCIQRPL30
ClinGenRPL30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6156
Chemical/Pharm GKB GenePA34714
Clinical trialRPL30
Miscellaneous
canSAR (ICR)RPL30 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL30
EVEXRPL30
GoPubMedRPL30
iHOPRPL30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:43 CET 2017

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