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RPL31 (ribosomal protein L31)

Identity

Alias_symbol (synonym)L31
Other alias
HGNC (Hugo) RPL31
LocusID (NCBI) 6160
Atlas_Id 55265
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 101002229 and ends at 101006423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FHL2 (2q12.1) / RPL31 (2q11.2)RPL31 (2q11.2) / EPHA5 (4q13.1)RPL31 (2q11.2) / HNRNPC (14q11.2)
RPL31 (2q11.2) / MYLK-AS1 (3q21.1)RPL31 (2q11.2) / NCEH1 (3q26.31)RPL31 (2q11.2) / TNKS2 (10q23.32)
RPL31P11 (1q23.3) / RPL31 (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL31   10334
Cards
Entrez_Gene (NCBI)RPL31  6160  ribosomal protein L31
AliasesL31
GeneCards (Weizmann)RPL31
Ensembl hg19 (Hinxton)ENSG00000071082 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000071082 [Gene_View]  chr2:101002229-101006423 [Contig_View]  RPL31 [Vega]
ICGC DataPortalENSG00000071082
TCGA cBioPortalRPL31
AceView (NCBI)RPL31
Genatlas (Paris)RPL31
WikiGenes6160
SOURCE (Princeton)RPL31
Genetics Home Reference (NIH)RPL31
Genomic and cartography
GoldenPath hg38 (UCSC)RPL31  -     chr2:101002229-101006423 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL31  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblRPL31 - 2q11.2 [CytoView hg19]  RPL31 - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIRPL31 [Mapview hg19]  RPL31 [Mapview hg38]
OMIM617415   
Gene and transcription
Genbank (Entrez)AK297167 AK297247 AK297483 AK311775 BC001663
RefSeq transcript (Entrez)NM_000993 NM_001098577 NM_001099693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL31
Cluster EST : UnigeneHs.469473 [ NCBI ]
CGAP (NCI)Hs.469473
Alternative Splicing GalleryENSG00000071082
Gene ExpressionRPL31 [ NCBI-GEO ]   RPL31 [ EBI - ARRAY_EXPRESS ]   RPL31 [ SEEK ]   RPL31 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL31 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6160
GTEX Portal (Tissue expression)RPL31
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62899   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62899  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62899
Splice isoforms : SwissVarP62899
PhosPhoSitePlusP62899
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L31E (PS01144)   
Domains : Interpro (EBI)Ribosomal_L31e    Ribosomal_L31e_CS    Ribosomal_L31e_dom   
Domain families : Pfam (Sanger)Ribosomal_L31e (PF01198)   
Domain families : Pfam (NCBI)pfam01198   
Domain families : Smart (EMBL)Ribosomal_L31e (SM01380)  
Domain structure : Prodom (Prabi Lyon)Ribosomal_L31e (PD006030)   
Conserved Domain (NCBI)RPL31
DMDM Disease mutations6160
Blocks (Seattle)RPL31
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP62899
Human Protein AtlasENSG00000071082
Peptide AtlasP62899
HPRD17994
IPIIPI00026302   IPI00856058   IPI00917675   IPI00915795   IPI00848331   IPI00917298   IPI00916315   IPI00916572   
Protein Interaction databases
DIP (DOE-UCLA)P62899
IntAct (EBI)P62899
FunCoupENSG00000071082
BioGRIDRPL31
STRING (EMBL)RPL31
ZODIACRPL31
Ontologies - Pathways
QuickGOP62899
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL31
Atlas of Cancer Signalling NetworkRPL31
Wikipedia pathwaysRPL31
Orthology - Evolution
OrthoDB6160
GeneTree (enSembl)ENSG00000071082
Phylogenetic Trees/Animal Genes : TreeFamRPL31
HOVERGENP62899
HOGENOMP62899
Homologs : HomoloGeneRPL31
Homology/Alignments : Family Browser (UCSC)RPL31
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL31P11 [1q23.3]  -  RPL31 [2q11.2]  [FUSC000771]  [FUSC000771]  [FUSC000771]  [FUSC000771]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL31 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL31
dbVarRPL31
ClinVarRPL31
1000_GenomesRPL31 
Exome Variant ServerRPL31
ExAC (Exome Aggregation Consortium)RPL31 (select the gene name)
Genetic variants : HAPMAP6160
Genomic Variants (DGV)RPL31 [DGVbeta]
DECIPHERRPL31 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL31 
Mutations
ICGC Data PortalRPL31 
TCGA Data PortalRPL31 
Broad Tumor PortalRPL31
OASIS PortalRPL31 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL31  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL31
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPL31
DgiDB (Drug Gene Interaction Database)RPL31
DoCM (Curated mutations)RPL31 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL31 (select a term)
intoGenRPL31
Cancer3DRPL31(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617415   
Orphanet
MedgenRPL31
Genetic Testing Registry RPL31
NextProtP62899 [Medical]
TSGene6160
GENETestsRPL31
Target ValidationRPL31
Huge Navigator RPL31 [HugePedia]
snp3D : Map Gene to Disease6160
BioCentury BCIQRPL31
ClinGenRPL31
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6160
Chemical/Pharm GKB GenePA34715
Clinical trialRPL31
Miscellaneous
canSAR (ICR)RPL31 (select the gene name)
Probes
Litterature
PubMed62 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL31
EVEXRPL31
GoPubMedRPL31
iHOPRPL31
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:49 CEST 2017

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