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RPL32 (ribosomal protein L32)

Identity

Alias_symbol (synonym)L32
Other aliasPP9932
HGNC (Hugo) RPL32
LocusID (NCBI) 6161
Atlas_Id 72821
Location 3p25.2  [Link to chromosome band 3p25]
Location_base_pair Starts at 12834945 and ends at 12841582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASH1L (1q22) / RPL32 (3p25.2)RPL32 (3p25.2) / CA12 (15q22.2)RPL32 (3p25.2) / PPP2R1A (19q13.41)
RPL32 (3p25.2) / SERPINA9 (14q32.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL32   10336
Cards
Entrez_Gene (NCBI)RPL32  6161  ribosomal protein L32
AliasesL32; PP9932
GeneCards (Weizmann)RPL32
Ensembl hg19 (Hinxton)ENSG00000144713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144713 [Gene_View]  chr3:12834945-12841582 [Contig_View]  RPL32 [Vega]
ICGC DataPortalENSG00000144713
TCGA cBioPortalRPL32
AceView (NCBI)RPL32
Genatlas (Paris)RPL32
WikiGenes6161
SOURCE (Princeton)RPL32
Genetics Home Reference (NIH)RPL32
Genomic and cartography
GoldenPath hg38 (UCSC)RPL32  -     chr3:12834945-12841582 -  3p25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL32  -     3p25.2   [Description]    (hg19-Feb_2009)
EnsemblRPL32 - 3p25.2 [CytoView hg19]  RPL32 - 3p25.2 [CytoView hg38]
Mapping of homologs : NCBIRPL32 [Mapview hg19]  RPL32 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124029 AK311909 BC011514 BC070209 BF960792
RefSeq transcript (Entrez)NM_000994 NM_001007073 NM_001007074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL32
Cluster EST : UnigeneHs.265174 [ NCBI ]
CGAP (NCI)Hs.265174
Alternative Splicing GalleryENSG00000144713
Gene ExpressionRPL32 [ NCBI-GEO ]   RPL32 [ EBI - ARRAY_EXPRESS ]   RPL32 [ SEEK ]   RPL32 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6161
GTEX Portal (Tissue expression)RPL32
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62910
Splice isoforms : SwissVarP62910
PhosPhoSitePlusP62910
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L32E (PS00580)   
Domains : Interpro (EBI)Ribosomal_L32e    Ribosomal_L32e_CS   
Domain families : Pfam (Sanger)Ribosomal_L32e (PF01655)   
Domain families : Pfam (NCBI)pfam01655   
Domain families : Smart (EMBL)Ribosomal_L32e (SM01393)  
Domain structure : Prodom (Prabi Lyon)Ribosomal_L32e (PD003823)   
Conserved Domain (NCBI)RPL32
DMDM Disease mutations6161
Blocks (Seattle)RPL32
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP62910
Human Protein AtlasENSG00000144713
Peptide AtlasP62910
HPRD17995
IPIIPI00395998   IPI00927658   IPI00927458   IPI00926827   
Protein Interaction databases
DIP (DOE-UCLA)P62910
IntAct (EBI)P62910
FunCoupENSG00000144713
BioGRIDRPL32
STRING (EMBL)RPL32
ZODIACRPL32
Ontologies - Pathways
QuickGOP62910
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cellular response to dexamethasone stimulus  liver regeneration  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  cellular response to dexamethasone stimulus  liver regeneration  
Pathways : KEGGRibosome   
NDEx NetworkRPL32
Atlas of Cancer Signalling NetworkRPL32
Wikipedia pathwaysRPL32
Orthology - Evolution
OrthoDB6161
GeneTree (enSembl)ENSG00000144713
Phylogenetic Trees/Animal Genes : TreeFamRPL32
HOVERGENP62910
HOGENOMP62910
Homologs : HomoloGeneRPL32
Homology/Alignments : Family Browser (UCSC)RPL32
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL32
dbVarRPL32
ClinVarRPL32
1000_GenomesRPL32 
Exome Variant ServerRPL32
ExAC (Exome Aggregation Consortium)RPL32 (select the gene name)
Genetic variants : HAPMAP6161
Genomic Variants (DGV)RPL32 [DGVbeta]
DECIPHERRPL32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL32 
Mutations
ICGC Data PortalRPL32 
TCGA Data PortalRPL32 
Broad Tumor PortalRPL32
OASIS PortalRPL32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL32
DgiDB (Drug Gene Interaction Database)RPL32
DoCM (Curated mutations)RPL32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL32 (select a term)
intoGenRPL32
Cancer3DRPL32(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL32
Genetic Testing Registry RPL32
NextProtP62910 [Medical]
TSGene6161
GENETestsRPL32
Target ValidationRPL32
Huge Navigator RPL32 [HugePedia]
snp3D : Map Gene to Disease6161
BioCentury BCIQRPL32
ClinGenRPL32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6161
Chemical/Pharm GKB GenePA34719
Clinical trialRPL32
Miscellaneous
canSAR (ICR)RPL32 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL32
EVEXRPL32
GoPubMedRPL32
iHOPRPL32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:19 CEST 2017

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