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RPL34 (ribosomal protein L34)

Identity

Alias_symbol (synonym)L34
Other alias
HGNC (Hugo) RPL34
LocusID (NCBI) 6164
Atlas_Id 42156
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 108620558 and ends at 108630483 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
INS-IGF2 (11p15.5) / RPL34 (4q25)RPL34 (4q25) / IQCJ (3q25.32)RPL34 (4q25) / NEK7 (1q31.3)
RPL34 (4q25) / PCCB (3q22.3)TP53INP2 (20q11.22) / RPL34 (4q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL34   10340
Cards
Entrez_Gene (NCBI)RPL34  6164  ribosomal protein L34
AliasesL34
GeneCards (Weizmann)RPL34
Ensembl hg19 (Hinxton)ENSG00000109475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109475 [Gene_View]  chr4:108620558-108630483 [Contig_View]  RPL34 [Vega]
ICGC DataPortalENSG00000109475
TCGA cBioPortalRPL34
AceView (NCBI)RPL34
Genatlas (Paris)RPL34
WikiGenes6164
SOURCE (Princeton)RPL34
Genetics Home Reference (NIH)RPL34
Genomic and cartography
GoldenPath hg38 (UCSC)RPL34  -     chr4:108620558-108630483 +  4q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL34  -     4q25   [Description]    (hg19-Feb_2009)
EnsemblRPL34 - 4q25 [CytoView hg19]  RPL34 - 4q25 [CytoView hg38]
Mapping of homologs : NCBIRPL34 [Mapview hg19]  RPL34 [Mapview hg38]
OMIM616862   
Gene and transcription
Genbank (Entrez)AA128015 AA128058 AF147334 AK055920 AY762981
RefSeq transcript (Entrez)NM_000995 NM_001319232 NM_001319234 NM_001319235 NM_001319236 NM_033625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL34
Cluster EST : UnigeneHs.438227 [ NCBI ]
CGAP (NCI)Hs.438227
Alternative Splicing GalleryENSG00000109475
Gene ExpressionRPL34 [ NCBI-GEO ]   RPL34 [ EBI - ARRAY_EXPRESS ]   RPL34 [ SEEK ]   RPL34 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6164
GTEX Portal (Tissue expression)RPL34
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49207   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49207  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49207
Splice isoforms : SwissVarP49207
PhosPhoSitePlusP49207
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L34E (PS01145)   
Domains : Interpro (EBI)Ribosomal_L34Ae    Ribosomal_L34e_CS   
Domain families : Pfam (Sanger)Ribosomal_L34e (PF01199)   
Domain families : Pfam (NCBI)pfam01199   
Conserved Domain (NCBI)RPL34
DMDM Disease mutations6164
Blocks (Seattle)RPL34
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP49207
Human Protein AtlasENSG00000109475
Peptide AtlasP49207
HPRD17996
IPIIPI00219160   IPI00985363   
Protein Interaction databases
DIP (DOE-UCLA)P49207
IntAct (EBI)P49207
FunCoupENSG00000109475
BioGRIDRPL34
STRING (EMBL)RPL34
ZODIACRPL34
Ontologies - Pathways
QuickGOP49207
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  ribosome biogenesis  cadherin binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  structural constituent of ribosome  mitochondrion  cytosol  rRNA processing  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  ribosome biogenesis  cadherin binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL34
Atlas of Cancer Signalling NetworkRPL34
Wikipedia pathwaysRPL34
Orthology - Evolution
OrthoDB6164
GeneTree (enSembl)ENSG00000109475
Phylogenetic Trees/Animal Genes : TreeFamRPL34
HOVERGENP49207
HOGENOMP49207
Homologs : HomoloGeneRPL34
Homology/Alignments : Family Browser (UCSC)RPL34
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL34
dbVarRPL34
ClinVarRPL34
1000_GenomesRPL34 
Exome Variant ServerRPL34
ExAC (Exome Aggregation Consortium)RPL34 (select the gene name)
Genetic variants : HAPMAP6164
Genomic Variants (DGV)RPL34 [DGVbeta]
DECIPHERRPL34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL34 
Mutations
ICGC Data PortalRPL34 
TCGA Data PortalRPL34 
Broad Tumor PortalRPL34
OASIS PortalRPL34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch RPL34
DgiDB (Drug Gene Interaction Database)RPL34
DoCM (Curated mutations)RPL34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL34 (select a term)
intoGenRPL34
Cancer3DRPL34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616862   
Orphanet
MedgenRPL34
Genetic Testing Registry RPL34
NextProtP49207 [Medical]
TSGene6164
GENETestsRPL34
Target ValidationRPL34
Huge Navigator RPL34 [HugePedia]
snp3D : Map Gene to Disease6164
BioCentury BCIQRPL34
ClinGenRPL34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6164
Chemical/Pharm GKB GenePA34723
Clinical trialRPL34
Miscellaneous
canSAR (ICR)RPL34 (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL34
EVEXRPL34
GoPubMedRPL34
iHOPRPL34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:12 CEST 2017

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