Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPL35 (ribosomal protein L35)

Identity

Alias_symbol (synonym)L35
Other alias
HGNC (Hugo) RPL35
LocusID (NCBI) 11224
Atlas_Id 72824
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127620158 and ends at 127624240 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
IGFBP5 (2q35) / RPL35 (9q33.3)RPL35 (9q33.3) / C1orf43 (1q21.3)RPL35 (9q33.3) / DIAPH1 (5q31.3)
RPL35 (9q33.3) / NOC2L (1p36.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL35   10344
Cards
Entrez_Gene (NCBI)RPL35  11224  ribosomal protein L35
AliasesL35
GeneCards (Weizmann)RPL35
Ensembl hg19 (Hinxton)ENSG00000136942 [Gene_View]  chr9:127620158-127624240 [Contig_View]  RPL35 [Vega]
Ensembl hg38 (Hinxton)ENSG00000136942 [Gene_View]  chr9:127620158-127624240 [Contig_View]  RPL35 [Vega]
ICGC DataPortalENSG00000136942
TCGA cBioPortalRPL35
AceView (NCBI)RPL35
Genatlas (Paris)RPL35
WikiGenes11224
SOURCE (Princeton)RPL35
Genetics Home Reference (NIH)RPL35
Genomic and cartography
GoldenPath hg19 (UCSC)RPL35  -     chr9:127620158-127624240 -  9q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL35  -     9q33.3   [Description]    (hg38-Dec_2013)
EnsemblRPL35 - 9q33.3 [CytoView hg19]  RPL35 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIRPL35 [Mapview hg19]  RPL35 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK291072 BC000348 BC010919 BC071915 BC094828
RefSeq transcript (Entrez)NM_007209
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)RPL35
Cluster EST : UnigeneHs.182825 [ NCBI ]
CGAP (NCI)Hs.182825
Alternative Splicing GalleryENSG00000136942
Gene ExpressionRPL35 [ NCBI-GEO ]   RPL35 [ EBI - ARRAY_EXPRESS ]   RPL35 [ SEEK ]   RPL35 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11224
GTEX Portal (Tissue expression)RPL35
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42766   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42766  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42766
Splice isoforms : SwissVarP42766
PhosPhoSitePlusP42766
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L29 (PS00579)   
Domains : Interpro (EBI)Ribosomal_L29    Ribosomal_L29_CS   
Domain families : Pfam (Sanger)Ribosomal_L29 (PF00831)   
Domain families : Pfam (NCBI)pfam00831   
Conserved Domain (NCBI)RPL35
DMDM Disease mutations11224
Blocks (Seattle)RPL35
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Structural Biology KnowledgeBase4V6X   
SCOP (Structural Classification of Proteins)4V6X   
CATH (Classification of proteins structures)4V6X   
SuperfamilyP42766
Human Protein AtlasENSG00000136942
Peptide AtlasP42766
HPRD10200
IPIIPI00412607   IPI00455757   IPI01014264   IPI00550247   
Protein Interaction databases
DIP (DOE-UCLA)P42766
IntAct (EBI)P42766
FunCoupENSG00000136942
BioGRIDRPL35
STRING (EMBL)RPL35
ZODIACRPL35
Ontologies - Pathways
QuickGOP42766
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  mRNA binding  structural constituent of ribosome  nucleolus  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  mRNA binding  structural constituent of ribosome  nucleolus  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  membrane  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  poly(A) RNA binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL35
Atlas of Cancer Signalling NetworkRPL35
Wikipedia pathwaysRPL35
Orthology - Evolution
OrthoDB11224
GeneTree (enSembl)ENSG00000136942
Phylogenetic Trees/Animal Genes : TreeFamRPL35
HOVERGENP42766
HOGENOMP42766
Homologs : HomoloGeneRPL35
Homology/Alignments : Family Browser (UCSC)RPL35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL35
dbVarRPL35
ClinVarRPL35
1000_GenomesRPL35 
Exome Variant ServerRPL35
ExAC (Exome Aggregation Consortium)RPL35 (select the gene name)
Genetic variants : HAPMAP11224
Genomic Variants (DGV)RPL35 [DGVbeta]
DECIPHER (Syndromes)9:127620158-127624240  ENSG00000136942
CONAN: Copy Number AnalysisRPL35 
Mutations
ICGC Data PortalRPL35 
TCGA Data PortalRPL35 
Broad Tumor PortalRPL35
OASIS PortalRPL35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL35
DgiDB (Drug Gene Interaction Database)RPL35
DoCM (Curated mutations)RPL35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL35 (select a term)
intoGenRPL35
Cancer3DRPL35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL35
Genetic Testing Registry RPL35
NextProtP42766 [Medical]
TSGene11224
GENETestsRPL35
Huge Navigator RPL35 [HugePedia]
snp3D : Map Gene to Disease11224
BioCentury BCIQRPL35
ClinGenRPL35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11224
Chemical/Pharm GKB GenePA34727
Clinical trialRPL35
Miscellaneous
canSAR (ICR)RPL35 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL35
EVEXRPL35
GoPubMedRPL35
iHOPRPL35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:41:44 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.