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RPL35A (ribosomal protein L35a)

Identity

Alias_symbol (synonym)L35A
Other aliasDBA5
HGNC (Hugo) RPL35A
LocusID (NCBI) 6165
Atlas_Id 72825
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 197950181 and ends at 197955850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USF3 (3q13.2) / RPL35A (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL35A   10345
Cards
Entrez_Gene (NCBI)RPL35A  6165  ribosomal protein L35a
AliasesDBA5; L35A
GeneCards (Weizmann)RPL35A
Ensembl hg19 (Hinxton)ENSG00000182899 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182899 [Gene_View]  chr3:197950181-197955850 [Contig_View]  RPL35A [Vega]
ICGC DataPortalENSG00000182899
TCGA cBioPortalRPL35A
AceView (NCBI)RPL35A
Genatlas (Paris)RPL35A
WikiGenes6165
SOURCE (Princeton)RPL35A
Genetics Home Reference (NIH)RPL35A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL35A  -     chr3:197950181-197955850 +  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL35A  -     3q29   [Description]    (hg19-Feb_2009)
EnsemblRPL35A - 3q29 [CytoView hg19]  RPL35A - 3q29 [CytoView hg38]
Mapping of homologs : NCBIRPL35A [Mapview hg19]  RPL35A [Mapview hg38]
OMIM180468   612528   
Gene and transcription
Genbank (Entrez)AB055768 AK026542 AK055653 AY871273 BC001037
RefSeq transcript (Entrez)NM_000996 NM_001316311
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL35A
Cluster EST : UnigeneHs.529631 [ NCBI ]
CGAP (NCI)Hs.529631
Alternative Splicing GalleryENSG00000182899
Gene ExpressionRPL35A [ NCBI-GEO ]   RPL35A [ EBI - ARRAY_EXPRESS ]   RPL35A [ SEEK ]   RPL35A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL35A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6165
GTEX Portal (Tissue expression)RPL35A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18077   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18077  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18077
Splice isoforms : SwissVarP18077
PhosPhoSitePlusP18077
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L35AE (PS01105)   
Domains : Interpro (EBI)Ribosomal_L35A    Ribosomal_L35Ae_CS    Transl_B-barrel   
Domain families : Pfam (Sanger)Ribosomal_L35Ae (PF01247)   
Domain families : Pfam (NCBI)pfam01247   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L35Ae (PD012670)   
Conserved Domain (NCBI)RPL35A
DMDM Disease mutations6165
Blocks (Seattle)RPL35A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP18077
Human Protein AtlasENSG00000182899
Peptide AtlasP18077
HPRD01596
IPIIPI00029731   IPI00793102   IPI00926495   IPI00926288   
Protein Interaction databases
DIP (DOE-UCLA)P18077
IntAct (EBI)P18077
FunCoupENSG00000182899
BioGRIDRPL35A
STRING (EMBL)RPL35A
ZODIACRPL35A
Ontologies - Pathways
QuickGOP18077
Ontology : AmiGOtRNA binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  mitochondrion  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  extracellular matrix  ribosomal large subunit biogenesis  extracellular exosome  
Ontology : EGO-EBItRNA binding  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  mitochondrion  cytosol  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  extracellular matrix  ribosomal large subunit biogenesis  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL35A
Atlas of Cancer Signalling NetworkRPL35A
Wikipedia pathwaysRPL35A
Orthology - Evolution
OrthoDB6165
GeneTree (enSembl)ENSG00000182899
Phylogenetic Trees/Animal Genes : TreeFamRPL35A
HOVERGENP18077
HOGENOMP18077
Homologs : HomoloGeneRPL35A
Homology/Alignments : Family Browser (UCSC)RPL35A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL35A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL35A
dbVarRPL35A
ClinVarRPL35A
1000_GenomesRPL35A 
Exome Variant ServerRPL35A
ExAC (Exome Aggregation Consortium)RPL35A (select the gene name)
Genetic variants : HAPMAP6165
Genomic Variants (DGV)RPL35A [DGVbeta]
DECIPHERRPL35A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL35A 
Mutations
ICGC Data PortalRPL35A 
TCGA Data PortalRPL35A 
Broad Tumor PortalRPL35A
OASIS PortalRPL35A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL35A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL35A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
BioMutasearch RPL35A
DgiDB (Drug Gene Interaction Database)RPL35A
DoCM (Curated mutations)RPL35A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL35A (select a term)
intoGenRPL35A
Cancer3DRPL35A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM180468    612528   
Orphanet429   
MedgenRPL35A
Genetic Testing Registry RPL35A
NextProtP18077 [Medical]
TSGene6165
GENETestsRPL35A
Target ValidationRPL35A
Huge Navigator RPL35A [HugePedia]
snp3D : Map Gene to Disease6165
BioCentury BCIQRPL35A
ClinGenRPL35A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6165
Chemical/Pharm GKB GenePA34728
Clinical trialRPL35A
Miscellaneous
canSAR (ICR)RPL35A (select the gene name)
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL35A
EVEXRPL35A
GoPubMedRPL35A
iHOPRPL35A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:20 CEST 2017

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