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RPL36 (ribosomal protein L36)

Identity

Alias_symbol (synonym)DKFZp566B023
L36
Other alias
HGNC (Hugo) RPL36
LocusID (NCBI) 25873
Atlas_Id 53908
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5690335 and ends at 5691667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOXP2 (7q31.1) / RPL36 (19p13.3)RPL36 (19p13.3) / IGFBP5 (2q35)RPL36 (19p13.3) / SLC23A2 (20p13)
UGGT1 (2q14.3) / RPL36 (19p13.3)ZFP36L2 (2p21) / RPL36 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL36   13631
Cards
Entrez_Gene (NCBI)RPL36  25873  ribosomal protein L36
AliasesL36
GeneCards (Weizmann)RPL36
Ensembl hg19 (Hinxton)ENSG00000130255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130255 [Gene_View]  chr19:5690335-5691667 [Contig_View]  RPL36 [Vega]
ICGC DataPortalENSG00000130255
TCGA cBioPortalRPL36
AceView (NCBI)RPL36
Genatlas (Paris)RPL36
WikiGenes25873
SOURCE (Princeton)RPL36
Genetics Home Reference (NIH)RPL36
Genomic and cartography
GoldenPath hg38 (UCSC)RPL36  -     chr19:5690335-5691667 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL36  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblRPL36 - 19p13.3 [CytoView hg19]  RPL36 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIRPL36 [Mapview hg19]  RPL36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB055769 AF077043 AK311990 AL050273 AM393173
RefSeq transcript (Entrez)NM_015414 NM_033643
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL36
Cluster EST : UnigeneHs.408018 [ NCBI ]
CGAP (NCI)Hs.408018
Alternative Splicing GalleryENSG00000130255
Gene ExpressionRPL36 [ NCBI-GEO ]   RPL36 [ EBI - ARRAY_EXPRESS ]   RPL36 [ SEEK ]   RPL36 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25873
GTEX Portal (Tissue expression)RPL36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3U8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3U8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3U8
Splice isoforms : SwissVarQ9Y3U8
PhosPhoSitePlusQ9Y3U8
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L36E (PS01190)   
Domains : Interpro (EBI)Ribosomal_L36e   
Domain families : Pfam (Sanger)Ribosomal_L36e (PF01158)   
Domain families : Pfam (NCBI)pfam01158   
Conserved Domain (NCBI)RPL36
DMDM Disease mutations25873
Blocks (Seattle)RPL36
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyQ9Y3U8
Human Protein AtlasENSG00000130255
Peptide AtlasQ9Y3U8
HPRD10201
IPIIPI00216237   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3U8
IntAct (EBI)Q9Y3U8
FunCoupENSG00000130255
BioGRIDRPL36
STRING (EMBL)RPL36
ZODIACRPL36
Ontologies - Pathways
QuickGOQ9Y3U8
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  
Pathways : KEGGRibosome   
NDEx NetworkRPL36
Atlas of Cancer Signalling NetworkRPL36
Wikipedia pathwaysRPL36
Orthology - Evolution
OrthoDB25873
GeneTree (enSembl)ENSG00000130255
Phylogenetic Trees/Animal Genes : TreeFamRPL36
HOVERGENQ9Y3U8
HOGENOMQ9Y3U8
Homologs : HomoloGeneRPL36
Homology/Alignments : Family Browser (UCSC)RPL36
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL36
dbVarRPL36
ClinVarRPL36
1000_GenomesRPL36 
Exome Variant ServerRPL36
ExAC (Exome Aggregation Consortium)RPL36 (select the gene name)
Genetic variants : HAPMAP25873
Genomic Variants (DGV)RPL36 [DGVbeta]
DECIPHERRPL36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL36 
Mutations
ICGC Data PortalRPL36 
TCGA Data PortalRPL36 
Broad Tumor PortalRPL36
OASIS PortalRPL36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL36
DgiDB (Drug Gene Interaction Database)RPL36
DoCM (Curated mutations)RPL36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL36 (select a term)
intoGenRPL36
Cancer3DRPL36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL36
Genetic Testing Registry RPL36
NextProtQ9Y3U8 [Medical]
TSGene25873
GENETestsRPL36
Target ValidationRPL36
Huge Navigator RPL36 [HugePedia]
snp3D : Map Gene to Disease25873
BioCentury BCIQRPL36
ClinGenRPL36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25873
Chemical/Pharm GKB GenePA34730
Clinical trialRPL36
Miscellaneous
canSAR (ICR)RPL36 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL36
EVEXRPL36
GoPubMedRPL36
iHOPRPL36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:06:12 CEST 2017

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