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RPL36A (ribosomal protein L36a)

Identity

Alias_namesRPL44
ribosomal protein L44
Alias_symbol (synonym)L36A
Other aliasL44L
MIG6
HGNC (Hugo) RPL36A
LocusID (NCBI) 6173
Atlas_Id 46511
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101390890 and ends at 101393852 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
JA040723 () / RPL36A (Xq22.1)ZNF195 (11p15.4) / RPL36A (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL36A   10359
Cards
Entrez_Gene (NCBI)RPL36A  6173  ribosomal protein L36a
AliasesL36A; L44L; MIG6; RPL44
GeneCards (Weizmann)RPL36A
Ensembl hg19 (Hinxton)ENSG00000241343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241343 [Gene_View]  chrX:101390890-101393852 [Contig_View]  RPL36A [Vega]
ICGC DataPortalENSG00000241343
TCGA cBioPortalRPL36A
AceView (NCBI)RPL36A
Genatlas (Paris)RPL36A
WikiGenes6173
SOURCE (Princeton)RPL36A
Genetics Home Reference (NIH)RPL36A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL36A  -     chrX:101390890-101393852 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL36A  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblRPL36A - Xq22.1 [CytoView hg19]  RPL36A - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIRPL36A [Mapview hg19]  RPL36A [Mapview hg38]
OMIM300902   
Gene and transcription
Genbank (Entrez)AK096711 AW150895 AY927233 BC001781 BC031015
RefSeq transcript (Entrez)NM_001199972 NM_021029
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL36A
Cluster EST : UnigeneHs.655348 [ NCBI ]
CGAP (NCI)Hs.655348
Alternative Splicing GalleryENSG00000241343
Gene ExpressionRPL36A [ NCBI-GEO ]   RPL36A [ EBI - ARRAY_EXPRESS ]   RPL36A [ SEEK ]   RPL36A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL36A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6173
GTEX Portal (Tissue expression)RPL36A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83881   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83881  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83881
Splice isoforms : SwissVarP83881
PhosPhoSitePlusP83881
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L44E (PS01172)   
Domains : Interpro (EBI)Ribosomal_L44e    Ribosomal_zn-bd   
Domain families : Pfam (Sanger)Ribosomal_L44 (PF00935)   
Domain families : Pfam (NCBI)pfam00935   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L44e (PD002841)   
Conserved Domain (NCBI)RPL36A
DMDM Disease mutations6173
Blocks (Seattle)RPL36A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP83881
Human Protein AtlasENSG00000241343
Peptide AtlasP83881
HPRD06709
IPIIPI00917181   IPI00896410   IPI00917341   IPI00220344   
Protein Interaction databases
DIP (DOE-UCLA)P83881
IntAct (EBI)P83881
FunCoupENSG00000241343
BioGRIDRPL36A
STRING (EMBL)RPL36A
ZODIACRPL36A
Ontologies - Pathways
QuickGOP83881
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  cytosol  ribosome  plasma membrane  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytosol  cytosol  ribosome  plasma membrane  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  
Pathways : KEGGRibosome   
NDEx NetworkRPL36A
Atlas of Cancer Signalling NetworkRPL36A
Wikipedia pathwaysRPL36A
Orthology - Evolution
OrthoDB6173
GeneTree (enSembl)ENSG00000241343
Phylogenetic Trees/Animal Genes : TreeFamRPL36A
HOVERGENP83881
HOGENOMP83881
Homologs : HomoloGeneRPL36A
Homology/Alignments : Family Browser (UCSC)RPL36A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)JA040723 [RPL36A]  -  Xq22.1 [FUSC000819]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL36A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL36A
dbVarRPL36A
ClinVarRPL36A
1000_GenomesRPL36A 
Exome Variant ServerRPL36A
ExAC (Exome Aggregation Consortium)RPL36A (select the gene name)
Genetic variants : HAPMAP6173
Genomic Variants (DGV)RPL36A [DGVbeta]
DECIPHERRPL36A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL36A 
Mutations
ICGC Data PortalRPL36A 
TCGA Data PortalRPL36A 
Broad Tumor PortalRPL36A
OASIS PortalRPL36A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL36A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL36A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch RPL36A
DgiDB (Drug Gene Interaction Database)RPL36A
DoCM (Curated mutations)RPL36A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL36A (select a term)
intoGenRPL36A
Cancer3DRPL36A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300902   
Orphanet
MedgenRPL36A
Genetic Testing Registry RPL36A
NextProtP83881 [Medical]
TSGene6173
GENETestsRPL36A
Huge Navigator RPL36A [HugePedia]
snp3D : Map Gene to Disease6173
BioCentury BCIQRPL36A
ClinGenRPL36A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6173
Chemical/Pharm GKB GenePA164742367
Clinical trialRPL36A
Miscellaneous
canSAR (ICR)RPL36A (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL36A
EVEXRPL36A
GoPubMedRPL36A
iHOPRPL36A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:35:33 CEST 2017

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