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RPL36A (ribosomal protein L36a)

Identity

Alias (NCBI)L36A
L44L
MIG6
RPL44
HGNC (Hugo) RPL36A
HGNC Alias symbL36A
HGNC Previous nameRPL44
HGNC Previous nameribosomal protein L44
LocusID (NCBI) 6173
Atlas_Id 46511
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101391011 and ends at 101396155 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JA040723 ()::RPL36A (Xq22.1)ZNF195 (11p15.4)::RPL36A (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPL36A   10359
Cards
Entrez_Gene (NCBI)RPL36A    ribosomal protein L36a
AliasesL36A; L44L; MIG6; RPL44
GeneCards (Weizmann)RPL36A
Ensembl hg19 (Hinxton)ENSG00000241343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000241343 [Gene_View]  ENSG00000241343 [Sequence]  chrX:101391011-101396155 [Contig_View]  RPL36A [Vega]
ICGC DataPortalENSG00000241343
TCGA cBioPortalRPL36A
AceView (NCBI)RPL36A
Genatlas (Paris)RPL36A
SOURCE (Princeton)RPL36A
Genetics Home Reference (NIH)RPL36A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL36A  -     chrX:101391011-101396155 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL36A  -     Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPathRPL36A - Xq22.1 [CytoView hg19]  RPL36A - Xq22.1 [CytoView hg38]
ImmunoBaseENSG00000241343
Genome Data Viewer NCBIRPL36A [Mapview hg19]  
OMIM300902   
Gene and transcription
Genbank (Entrez)AK096711 AW150895 AY927233 BC001781 BC031015
RefSeq transcript (Entrez)NM_001199972 NM_021029
Consensus coding sequences : CCDS (NCBI)RPL36A
Gene ExpressionRPL36A [ NCBI-GEO ]   RPL36A [ EBI - ARRAY_EXPRESS ]   RPL36A [ SEEK ]   RPL36A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL36A [ Firebrowse - Broad ]
GenevisibleExpression of RPL36A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6173
GTEX Portal (Tissue expression)RPL36A
Human Protein AtlasENSG00000241343-RPL36A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP83881   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP83881  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP83881
PhosPhoSitePlusP83881
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L44E (PS01172)   
Domains : Interpro (EBI)Ribosomal_L44e    Ribosomal_zn-bd   
Domain families : Pfam (Sanger)Ribosomal_L44 (PF00935)   
Domain families : Pfam (NCBI)pfam00935   
Conserved Domain (NCBI)RPL36A
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB Europe4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0    6IP5    6IP6    6IP8    6LQM    6LSR    6LSS    6LU8    6OLE    6OLF    6OLG    6OLI    6OLZ    6OM0    6OM7    6QZP    6XA1    6Y0G    6Y2L    6Y57    6Y6X    6Z6M    6Z6N    6ZM7    6ZME    6ZMI    6ZMO   
SuperfamilyP83881
AlphaFold pdb e-kbP83881   
Human Protein Atlas [tissue]ENSG00000241343-RPL36A [tissue]
HPRD06709
Protein Interaction databases
DIP (DOE-UCLA)P83881
IntAct (EBI)P83881
BioGRIDRPL36A
STRING (EMBL)RPL36A
ZODIACRPL36A
Ontologies - Pathways
QuickGOP83881
Ontology : AmiGOcytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  endoplasmic reticulum  cytosol  cytosol  ribosome  plasma membrane  translation  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  polysomal ribosome  
Ontology : EGO-EBIcytoplasmic translation  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  structural constituent of ribosome  protein binding  endoplasmic reticulum  cytosol  cytosol  ribosome  plasma membrane  translation  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  cytosolic ribosome  polysomal ribosome  
Pathways : KEGGKEGG_RIBOSOME   
NDEx NetworkRPL36A
Atlas of Cancer Signalling NetworkRPL36A
Wikipedia pathwaysRPL36A
Orthology - Evolution
OrthoDB6173
GeneTree (enSembl)ENSG00000241343
Phylogenetic Trees/Animal Genes : TreeFamRPL36A
Homologs : HomoloGeneRPL36A
Homology/Alignments : Family Browser (UCSC)RPL36A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)JA040723 [RPL36A]  -  Xq22.1 [FUSC000819]
Fusion : QuiverRPL36A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL36A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL36A
dbVarRPL36A
ClinVarRPL36A
MonarchRPL36A
1000_GenomesRPL36A 
Exome Variant ServerRPL36A
GNOMAD BrowserENSG00000241343
Varsome BrowserRPL36A
ACMGRPL36A variants
VarityP83881
Genomic Variants (DGV)RPL36A [DGVbeta]
DECIPHERRPL36A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL36A 
Mutations
ICGC Data PortalRPL36A 
TCGA Data PortalRPL36A 
Broad Tumor PortalRPL36A
OASIS PortalRPL36A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL36A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL36A
Mutations and Diseases : HGMDRPL36A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPL36A
DgiDB (Drug Gene Interaction Database)RPL36A
DoCM (Curated mutations)RPL36A
CIViC (Clinical Interpretations of Variants in Cancer)RPL36A
Cancer3DRPL36A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300902   
Orphanet
DisGeNETRPL36A
MedgenRPL36A
Genetic Testing Registry RPL36A
NextProtP83881 [Medical]
GENETestsRPL36A
Target ValidationRPL36A
Huge Navigator RPL36A [HugePedia]
ClinGenRPL36A
Clinical trials, drugs, therapy
MyCancerGenomeRPL36A
Protein Interactions : CTDRPL36A
Pharm GKB GenePA164742367
PharosP83881
Clinical trialRPL36A
Miscellaneous
canSAR (ICR)RPL36A
HarmonizomeRPL36A
ARCHS4RPL36A
DataMed IndexRPL36A
Probes
Litterature
PubMed83 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL36A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:56:47 CET 2022

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