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RPL37A (ribosomal protein L37a)

Identity

Alias_symbol (synonym)L37A
Other alias
HGNC (Hugo) RPL37A
LocusID (NCBI) 6168
Atlas_Id 72831
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 216498797 and ends at 216501465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CCDC88A (2p16.1) / RPL37A (2q35)DNM1L (12p11.21) / RPL37A (2q35)PRPF8 (17p13.3) / RPL37A (2q35)
RPL37A (2q35) / CBX6 (22q13.1)RPL37A (2q35) / DHX57 (2p22.1)RPL37A (2q35) / EIF4A1 (17p13.1)
RPL37A (2q35) / HCK (20q11.21)RPL37A (2q35) / IGFBP2 (2q35)RPL37A (2q35) / KLHL12 (1q32.1)
RPL37A (2q35) / MYL6 (12q13.2)RPL37A (2q35) / PPIA (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL37A   10348
Cards
Entrez_Gene (NCBI)RPL37A  6168  ribosomal protein L37a
AliasesL37A
GeneCards (Weizmann)RPL37A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:216498797-216501465 [Contig_View]  RPL37A [Vega]
TCGA cBioPortalRPL37A
AceView (NCBI)RPL37A
Genatlas (Paris)RPL37A
WikiGenes6168
SOURCE (Princeton)RPL37A
Genetics Home Reference (NIH)RPL37A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL37A  -     chr2:216498797-216501465 +  2q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL37A  -     2q35   [Description]    (hg19-Feb_2009)
EnsemblRPL37A - 2q35 [CytoView hg19]  RPL37A - 2q35 [CytoView hg38]
Mapping of homologs : NCBIRPL37A [Mapview hg19]  RPL37A [Mapview hg38]
OMIM613314   
Gene and transcription
Genbank (Entrez)AK023419 AK289472 AK291857 BC000555 BC014262
RefSeq transcript (Entrez)NM_000998
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL37A
Cluster EST : UnigeneHs.433701 [ NCBI ]
CGAP (NCI)Hs.433701
Gene ExpressionRPL37A [ NCBI-GEO ]   RPL37A [ EBI - ARRAY_EXPRESS ]   RPL37A [ SEEK ]   RPL37A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL37A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6168
GTEX Portal (Tissue expression)RPL37A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61513   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61513  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61513
Splice isoforms : SwissVarP61513
PhosPhoSitePlusP61513
Domains : Interpro (EBI)Ribosomal_L37ae    Ribosomal_L37ae/L37e    Ribosomal_zn-bd   
Domain families : Pfam (Sanger)Ribosomal_L37ae (PF01780)   
Domain families : Pfam (NCBI)pfam01780   
Conserved Domain (NCBI)RPL37A
DMDM Disease mutations6168
Blocks (Seattle)RPL37A
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP61513
Peptide AtlasP61513
HPRD17997
IPIIPI00414860   IPI00924813   IPI00926815   IPI00926175   
Protein Interaction databases
DIP (DOE-UCLA)P61513
IntAct (EBI)P61513
BioGRIDRPL37A
STRING (EMBL)RPL37A
ZODIACRPL37A
Ontologies - Pathways
QuickGOP61513
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  metal ion binding  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  cytosol  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  metal ion binding  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL37A
Atlas of Cancer Signalling NetworkRPL37A
Wikipedia pathwaysRPL37A
Orthology - Evolution
OrthoDB6168
Phylogenetic Trees/Animal Genes : TreeFamRPL37A
HOVERGENP61513
HOGENOMP61513
Homologs : HomoloGeneRPL37A
Homology/Alignments : Family Browser (UCSC)RPL37A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL37A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL37A
dbVarRPL37A
ClinVarRPL37A
1000_GenomesRPL37A 
Exome Variant ServerRPL37A
ExAC (Exome Aggregation Consortium)RPL37A (select the gene name)
Genetic variants : HAPMAP6168
Genomic Variants (DGV)RPL37A [DGVbeta]
DECIPHERRPL37A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL37A 
Mutations
ICGC Data PortalRPL37A 
TCGA Data PortalRPL37A 
Broad Tumor PortalRPL37A
OASIS PortalRPL37A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL37A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL37A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL37A
DgiDB (Drug Gene Interaction Database)RPL37A
DoCM (Curated mutations)RPL37A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL37A (select a term)
intoGenRPL37A
Cancer3DRPL37A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613314   
Orphanet
MedgenRPL37A
Genetic Testing Registry RPL37A
NextProtP61513 [Medical]
TSGene6168
GENETestsRPL37A
Target ValidationRPL37A
Huge Navigator RPL37A [HugePedia]
snp3D : Map Gene to Disease6168
BioCentury BCIQRPL37A
ClinGenRPL37A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6168
Chemical/Pharm GKB GenePA34737
Clinical trialRPL37A
Miscellaneous
canSAR (ICR)RPL37A (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL37A
EVEXRPL37A
GoPubMedRPL37A
iHOPRPL37A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:36:48 CEST 2017

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