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RPL38 (ribosomal protein L38)

Identity

Alias_symbol (synonym)L38
Other alias
HGNC (Hugo) RPL38
LocusID (NCBI) 6169
Atlas_Id 72832
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 72199795 and ends at 72206019 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MNT (17p13.3) / RPL38 (17q25.1)NDRG2 (14q11.2) / RPL38 (17q25.1)PMS2P3 (7q11.23) / RPL38 (17q25.1)
PRR13 (12q13.13) / RPL38 (17q25.1)PXN (12q24.23) / RPL38 (17q25.1)RPL38 (17q25.1) / CITED1 (Xq13.1)
RPL38 (17q25.1) / DONSON (21q22.11)RPL38 (17q25.1) / DST (6p12.1)RPL38 (17q25.1) / HSP90AA1 (14q32.31)
RPL38 (17q25.1) / NCAPH2 (22q13.33)RPL38 (17q25.1) / PHF20 (20q11.22)RPL38 (17q25.1) / RPL3 (22q13.1)
RPL38 (17q25.1) / RPL38 (17q25.1)RPL38 (17q25.1) / SNX3 (6q21)RPL38 (17q25.1) / TEK (9p21.2)
RPL38 (17q25.1) / TRAPPC6B (14q21.1)RPL38 (17q25.1) / TRMT5 (14q23.1)RPL38 (17q25.1) / TTYH2 (17q25.1)
RPL38 (17q25.1) / UBE2J2 (1p36.33)SUPT7L (2p23.3) / RPL38 (17q25.1)SURF6 (9q34.2) / RPL38 (17q25.1)
TEK (9p21.2) / RPL38 (17q25.1)UBE2J2 (1p36.33) / RPL38 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL38   10349
Cards
Entrez_Gene (NCBI)RPL38  6169  ribosomal protein L38
AliasesL38
GeneCards (Weizmann)RPL38
Ensembl hg19 (Hinxton)ENSG00000172809 [Gene_View]  chr17:72199795-72206019 [Contig_View]  RPL38 [Vega]
Ensembl hg38 (Hinxton)ENSG00000172809 [Gene_View]  chr17:72199795-72206019 [Contig_View]  RPL38 [Vega]
ICGC DataPortalENSG00000172809
TCGA cBioPortalRPL38
AceView (NCBI)RPL38
Genatlas (Paris)RPL38
WikiGenes6169
SOURCE (Princeton)RPL38
Genetics Home Reference (NIH)RPL38
Genomic and cartography
GoldenPath hg19 (UCSC)RPL38  -     chr17:72199795-72206019 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL38  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblRPL38 - 17q25.1 [CytoView hg19]  RPL38 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIRPL38 [Mapview hg19]  RPL38 [Mapview hg38]
OMIM604182   
Gene and transcription
Genbank (Entrez)AB055771 AK097905 AK312119 BC000603 BQ276548
RefSeq transcript (Entrez)NM_000999 NM_001035258
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)RPL38
Cluster EST : UnigeneHs.380953 [ NCBI ]
CGAP (NCI)Hs.380953
Alternative Splicing GalleryENSG00000172809
Gene ExpressionRPL38 [ NCBI-GEO ]   RPL38 [ EBI - ARRAY_EXPRESS ]   RPL38 [ SEEK ]   RPL38 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6169
GTEX Portal (Tissue expression)RPL38
Protein : pattern, domain, 3D structure
UniProt/SwissProtP63173   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP63173  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP63173
Splice isoforms : SwissVarP63173
PhosPhoSitePlusP63173
Domains : Interpro (EBI)Ribosomal_L38e   
Domain families : Pfam (Sanger)Ribosomal_L38e (PF01781)   
Domain families : Pfam (NCBI)pfam01781   
Domain structure : Prodom (Prabi Lyon)Ribosomal_L38e (PD010361)   
Conserved Domain (NCBI)RPL38
DMDM Disease mutations6169
Blocks (Seattle)RPL38
PDB (SRS)4V6X   
PDB (PDBSum)4V6X   
PDB (IMB)4V6X   
PDB (RSDB)4V6X   
Structural Biology KnowledgeBase4V6X   
SCOP (Structural Classification of Proteins)4V6X   
CATH (Classification of proteins structures)4V6X   
SuperfamilyP63173
Human Protein AtlasENSG00000172809
Peptide AtlasP63173
HPRD16048
IPIIPI00215790   
Protein Interaction databases
DIP (DOE-UCLA)P63173
IntAct (EBI)P63173
FunCoupENSG00000172809
BioGRIDRPL38
STRING (EMBL)RPL38
ZODIACRPL38
Ontologies - Pathways
QuickGOP63173
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  skeletal system development  ossification  RNA binding  structural constituent of ribosome  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  regulation of translation  SRP-dependent cotranslational protein targeting to membrane  sensory perception of sound  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  eukaryotic 80S initiation complex  90S preribosome assembly  middle ear morphogenesis  cellular protein metabolic process  axial mesoderm development  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  skeletal system development  ossification  RNA binding  structural constituent of ribosome  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  regulation of translation  SRP-dependent cotranslational protein targeting to membrane  sensory perception of sound  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  eukaryotic 80S initiation complex  90S preribosome assembly  middle ear morphogenesis  cellular protein metabolic process  axial mesoderm development  
Pathways : KEGGRibosome   
NDEx NetworkRPL38
Atlas of Cancer Signalling NetworkRPL38
Wikipedia pathwaysRPL38
Orthology - Evolution
OrthoDB6169
GeneTree (enSembl)ENSG00000172809
Phylogenetic Trees/Animal Genes : TreeFamRPL38
HOVERGENP63173
HOGENOMP63173
Homologs : HomoloGeneRPL38
Homology/Alignments : Family Browser (UCSC)RPL38
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL38 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL38
dbVarRPL38
ClinVarRPL38
1000_GenomesRPL38 
Exome Variant ServerRPL38
ExAC (Exome Aggregation Consortium)RPL38 (select the gene name)
Genetic variants : HAPMAP6169
Genomic Variants (DGV)RPL38 [DGVbeta]
DECIPHER (Syndromes)17:72199795-72206019  ENSG00000172809
CONAN: Copy Number AnalysisRPL38 
Mutations
ICGC Data PortalRPL38 
TCGA Data PortalRPL38 
Broad Tumor PortalRPL38
OASIS PortalRPL38 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL38  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL38
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL38
DgiDB (Drug Gene Interaction Database)RPL38
DoCM (Curated mutations)RPL38 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL38 (select a term)
intoGenRPL38
Cancer3DRPL38(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604182   
Orphanet
MedgenRPL38
Genetic Testing Registry RPL38
NextProtP63173 [Medical]
TSGene6169
GENETestsRPL38
Huge Navigator RPL38 [HugePedia]
snp3D : Map Gene to Disease6169
BioCentury BCIQRPL38
ClinGenRPL38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6169
Chemical/Pharm GKB GenePA34741
Clinical trialRPL38
Miscellaneous
canSAR (ICR)RPL38 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL38
EVEXRPL38
GoPubMedRPL38
iHOPRPL38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:41:46 CET 2017

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