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RPL39L (ribosomal protein L39 like)

Identity

Alias_namesRPL39L1
ribosomal protein L39-like 1
ribosomal protein L39-like
Other alias
HGNC (Hugo) RPL39L
LocusID (NCBI) 116832
Atlas_Id 55040
Location 3q27.3  [Link to chromosome band 3q27]
Location_base_pair Starts at 186838741 and ends at 186857263 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
UBXN7 (3q29) / RPL39L (3q27.3)UBXN7 3q29 / RPL39L 3q27.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL39L   17094
Cards
Entrez_Gene (NCBI)RPL39L  116832  ribosomal protein L39 like
AliasesRPL39L1
GeneCards (Weizmann)RPL39L
Ensembl hg19 (Hinxton)ENSG00000163923 [Gene_View]  chr3:186838741-186857263 [Contig_View]  RPL39L [Vega]
Ensembl hg38 (Hinxton)ENSG00000163923 [Gene_View]  chr3:186838741-186857263 [Contig_View]  RPL39L [Vega]
ICGC DataPortalENSG00000163923
TCGA cBioPortalRPL39L
AceView (NCBI)RPL39L
Genatlas (Paris)RPL39L
WikiGenes116832
SOURCE (Princeton)RPL39L
Genetics Home Reference (NIH)RPL39L
Genomic and cartography
GoldenPath hg19 (UCSC)RPL39L  -     chr3:186838741-186857263 -  3q27.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPL39L  -     3q27.3   [Description]    (hg38-Dec_2013)
EnsemblRPL39L - 3q27.3 [CytoView hg19]  RPL39L - 3q27.3 [CytoView hg38]
Mapping of homologs : NCBIRPL39L [Mapview hg19]  RPL39L [Mapview hg38]
OMIM607547   
Gene and transcription
Genbank (Entrez)AB063610 AF548529 BC012328 HQ447917 L05096
RefSeq transcript (Entrez)NM_052969
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)RPL39L
Cluster EST : UnigeneHs.647900 [ NCBI ]
CGAP (NCI)Hs.647900
Alternative Splicing GalleryENSG00000163923
Gene ExpressionRPL39L [ NCBI-GEO ]   RPL39L [ EBI - ARRAY_EXPRESS ]   RPL39L [ SEEK ]   RPL39L [ MEM ]
Gene Expression Viewer (FireBrowse)RPL39L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116832
GTEX Portal (Tissue expression)RPL39L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EH5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EH5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EH5
Splice isoforms : SwissVarQ96EH5
PhosPhoSitePlusQ96EH5
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L39E (PS00051)   
Domains : Interpro (EBI)Ribosomal_L39    Ribosomal_L39_CS    Ribosomal_L39e_dom   
Domain families : Pfam (Sanger)Ribosomal_L39 (PF00832)   
Domain families : Pfam (NCBI)pfam00832   
Conserved Domain (NCBI)RPL39L
DMDM Disease mutations116832
Blocks (Seattle)RPL39L
SuperfamilyQ96EH5
Human Protein AtlasENSG00000163923
Peptide AtlasQ96EH5
HPRD09610
IPIIPI00215843   
Protein Interaction databases
DIP (DOE-UCLA)Q96EH5
IntAct (EBI)Q96EH5
FunCoupENSG00000163923
BioGRIDRPL39L
STRING (EMBL)RPL39L
ZODIACRPL39L
Ontologies - Pathways
QuickGOQ96EH5
Ontology : AmiGORNA binding  structural constituent of ribosome  protein binding  translation  spermatogenesis  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  protein binding  translation  spermatogenesis  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  
NDEx NetworkRPL39L
Atlas of Cancer Signalling NetworkRPL39L
Wikipedia pathwaysRPL39L
Orthology - Evolution
OrthoDB116832
GeneTree (enSembl)ENSG00000163923
Phylogenetic Trees/Animal Genes : TreeFamRPL39L
HOVERGENQ96EH5
HOGENOMQ96EH5
Homologs : HomoloGeneRPL39L
Homology/Alignments : Family Browser (UCSC)RPL39L
Gene fusions - Rearrangements
Fusion : MitelmanUBXN7/RPL39L [3q29/3q27.3]  [t(3;3)(q27;q29)]  
Fusion: TCGAUBXN7 3q29 RPL39L 3q27.3 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL39L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL39L
dbVarRPL39L
ClinVarRPL39L
1000_GenomesRPL39L 
Exome Variant ServerRPL39L
ExAC (Exome Aggregation Consortium)RPL39L (select the gene name)
Genetic variants : HAPMAP116832
Genomic Variants (DGV)RPL39L [DGVbeta]
DECIPHER (Syndromes)3:186838741-186857263  ENSG00000163923
CONAN: Copy Number AnalysisRPL39L 
Mutations
ICGC Data PortalRPL39L 
TCGA Data PortalRPL39L 
Broad Tumor PortalRPL39L
OASIS PortalRPL39L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL39L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL39L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL39L
DgiDB (Drug Gene Interaction Database)RPL39L
DoCM (Curated mutations)RPL39L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL39L (select a term)
intoGenRPL39L
Cancer3DRPL39L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607547   
Orphanet
MedgenRPL39L
Genetic Testing Registry RPL39L
NextProtQ96EH5 [Medical]
TSGene116832
GENETestsRPL39L
Huge Navigator RPL39L [HugePedia]
snp3D : Map Gene to Disease116832
BioCentury BCIQRPL39L
ClinGenRPL39L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116832
Chemical/Pharm GKB GenePA34744
Clinical trialRPL39L
Miscellaneous
canSAR (ICR)RPL39L (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL39L
EVEXRPL39L
GoPubMedRPL39L
iHOPRPL39L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:25:38 CET 2017

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