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RPL39P5 (ribosomal protein L39 pseudogene 5)

Identity

Other aliasRPL39_7_406
HGNC (Hugo) RPL39P5
LocusID (NCBI) 553117
Atlas_Id 72834
Location 3q22.2  [Link to chromosome band 3q22]
Location_base_pair Starts at 134351852 and ends at 134356561 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)RPL39P5   26015
Cards
Entrez_Gene (NCBI)RPL39P5  553117  ribosomal protein L39 pseudogene 5
AliasesRPL39_7_406
GeneCards (Weizmann)RPL39P5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:134351852-134356561 [Contig_View]  RPL39P5 [Vega]
TCGA cBioPortalRPL39P5
AceView (NCBI)RPL39P5
Genatlas (Paris)RPL39P5
WikiGenes553117
SOURCE (Princeton)RPL39P5
Genetics Home Reference (NIH)RPL39P5
Genomic and cartography
GoldenPath hg38 (UCSC)RPL39P5  -     chr3:134351852-134356561 -  3q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL39P5  -     3q22.2   [Description]    (hg19-Feb_2009)
EnsemblRPL39P5 - 3q22.2 [CytoView hg19]  RPL39P5 - 3q22.2 [CytoView hg38]
Mapping of homologs : NCBIRPL39P5 [Mapview hg19]  RPL39P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209077
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL39P5
Cluster EST : UnigeneHs.611241 [ NCBI ]
CGAP (NCI)Hs.611241
Gene ExpressionRPL39P5 [ NCBI-GEO ]   RPL39P5 [ EBI - ARRAY_EXPRESS ]   RPL39P5 [ SEEK ]   RPL39P5 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL39P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)553117
GTEX Portal (Tissue expression)RPL39P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ59GN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ59GN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ59GN2
Splice isoforms : SwissVarQ59GN2
PhosPhoSitePlusQ59GN2
Domains : Interpro (EBI)Ribosomal_L39    Ribosomal_L39e_dom   
Domain families : Pfam (Sanger)Ribosomal_L39 (PF00832)   
Domain families : Pfam (NCBI)pfam00832   
Conserved Domain (NCBI)RPL39P5
DMDM Disease mutations553117
Blocks (Seattle)RPL39P5
SuperfamilyQ59GN2
Peptide AtlasQ59GN2
IPIIPI00037619   
Protein Interaction databases
DIP (DOE-UCLA)Q59GN2
IntAct (EBI)Q59GN2
BioGRIDRPL39P5
STRING (EMBL)RPL39P5
ZODIACRPL39P5
Ontologies - Pathways
QuickGOQ59GN2
Ontology : AmiGORNA binding  structural constituent of ribosome  translation  cytosolic large ribosomal subunit  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  translation  cytosolic large ribosomal subunit  
NDEx NetworkRPL39P5
Atlas of Cancer Signalling NetworkRPL39P5
Wikipedia pathwaysRPL39P5
Orthology - Evolution
OrthoDB553117
Phylogenetic Trees/Animal Genes : TreeFamRPL39P5
HOVERGENQ59GN2
HOGENOMQ59GN2
Homologs : HomoloGeneRPL39P5
Homology/Alignments : Family Browser (UCSC)RPL39P5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL39P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL39P5
dbVarRPL39P5
ClinVarRPL39P5
1000_GenomesRPL39P5 
Exome Variant ServerRPL39P5
ExAC (Exome Aggregation Consortium)RPL39P5 (select the gene name)
Genetic variants : HAPMAP553117
Genomic Variants (DGV)RPL39P5 [DGVbeta]
DECIPHERRPL39P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL39P5 
Mutations
ICGC Data PortalRPL39P5 
TCGA Data PortalRPL39P5 
Broad Tumor PortalRPL39P5
OASIS PortalRPL39P5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPL39P5
BioMutasearch RPL39P5
DgiDB (Drug Gene Interaction Database)RPL39P5
DoCM (Curated mutations)RPL39P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL39P5 (select a term)
intoGenRPL39P5
Cancer3DRPL39P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenRPL39P5
Genetic Testing Registry RPL39P5
NextProtQ59GN2 [Medical]
TSGene553117
GENETestsRPL39P5
Target ValidationRPL39P5
Huge Navigator RPL39P5 [HugePedia]
snp3D : Map Gene to Disease553117
BioCentury BCIQRPL39P5
ClinGenRPL39P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD553117
Chemical/Pharm GKB GenePA142670998
Clinical trialRPL39P5
Miscellaneous
canSAR (ICR)RPL39P5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL39P5
EVEXRPL39P5
GoPubMedRPL39P5
iHOPRPL39P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:21 CEST 2017

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