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RPL3L (ribosomal protein L3 like)

Identity

Alias_namesribosomal protein L3-like
Other alias-
HGNC (Hugo) RPL3L
LocusID (NCBI) 6123
Atlas_Id 72835
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1944579 and ends at 1954678 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL3L   10351
Cards
Entrez_Gene (NCBI)RPL3L  6123  ribosomal protein L3 like
Aliases
GeneCards (Weizmann)RPL3L
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:1944579-1954678 [Contig_View]  RPL3L [Vega]
TCGA cBioPortalRPL3L
AceView (NCBI)RPL3L
Genatlas (Paris)RPL3L
WikiGenes6123
SOURCE (Princeton)RPL3L
Genetics Home Reference (NIH)RPL3L
Genomic and cartography
GoldenPath hg38 (UCSC)RPL3L  -     chr16:1944579-1954678 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL3L  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblRPL3L - 16p13.3 [CytoView hg19]  RPL3L - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIRPL3L [Mapview hg19]  RPL3L [Mapview hg38]
OMIM617416   
Gene and transcription
Genbank (Entrez)AK313162 BC050413 U65581
RefSeq transcript (Entrez)NM_005061
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL3L
Cluster EST : UnigeneHs.657266 [ NCBI ]
CGAP (NCI)Hs.657266
Gene ExpressionRPL3L [ NCBI-GEO ]   RPL3L [ EBI - ARRAY_EXPRESS ]   RPL3L [ SEEK ]   RPL3L [ MEM ]
Gene Expression Viewer (FireBrowse)RPL3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6123
GTEX Portal (Tissue expression)RPL3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92901   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92901  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92901
Splice isoforms : SwissVarQ92901
PhosPhoSitePlusQ92901
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L3 (PS00474)   
Domains : Interpro (EBI)Ribosomal_L3    Ribosomal_L3_CS    Transl_B-barrel   
Domain families : Pfam (Sanger)Ribosomal_L3 (PF00297)   
Domain families : Pfam (NCBI)pfam00297   
Conserved Domain (NCBI)RPL3L
DMDM Disease mutations6123
Blocks (Seattle)RPL3L
SuperfamilyQ92901
Peptide AtlasQ92901
HPRD17998
IPIIPI00219335   
Protein Interaction databases
DIP (DOE-UCLA)Q92901
IntAct (EBI)Q92901
BioGRIDRPL3L
STRING (EMBL)RPL3L
ZODIACRPL3L
Ontologies - Pathways
QuickGOQ92901
Ontology : AmiGORNA binding  structural constituent of ribosome  ribosome  translation  membrane  cytosolic large ribosomal subunit  
Ontology : EGO-EBIRNA binding  structural constituent of ribosome  ribosome  translation  membrane  cytosolic large ribosomal subunit  
Pathways : KEGGRibosome   
NDEx NetworkRPL3L
Atlas of Cancer Signalling NetworkRPL3L
Wikipedia pathwaysRPL3L
Orthology - Evolution
OrthoDB6123
Phylogenetic Trees/Animal Genes : TreeFamRPL3L
HOVERGENQ92901
HOGENOMQ92901
Homologs : HomoloGeneRPL3L
Homology/Alignments : Family Browser (UCSC)RPL3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL3L
dbVarRPL3L
ClinVarRPL3L
1000_GenomesRPL3L 
Exome Variant ServerRPL3L
ExAC (Exome Aggregation Consortium)RPL3L (select the gene name)
Genetic variants : HAPMAP6123
Genomic Variants (DGV)RPL3L [DGVbeta]
DECIPHERRPL3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL3L 
Mutations
ICGC Data PortalRPL3L 
TCGA Data PortalRPL3L 
Broad Tumor PortalRPL3L
OASIS PortalRPL3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL3L
DgiDB (Drug Gene Interaction Database)RPL3L
DoCM (Curated mutations)RPL3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL3L (select a term)
intoGenRPL3L
Cancer3DRPL3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617416   
Orphanet
MedgenRPL3L
Genetic Testing Registry RPL3L
NextProtQ92901 [Medical]
TSGene6123
GENETestsRPL3L
Target ValidationRPL3L
Huge Navigator RPL3L [HugePedia]
snp3D : Map Gene to Disease6123
BioCentury BCIQRPL3L
ClinGenRPL3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6123
Chemical/Pharm GKB GenePA34746
Clinical trialRPL3L
Miscellaneous
canSAR (ICR)RPL3L (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL3L
EVEXRPL3L
GoPubMedRPL3L
iHOPRPL3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:39:21 CEST 2017

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