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RPL41 (ribosomal protein L41)

Identity

Alias_symbol (synonym)L41
Other alias
HGNC (Hugo) RPL41
LocusID (NCBI) 6171
Atlas_Id 51552
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 56116590 and ends at 56117832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTTNBP2NL (1p13.2) / RPL41 (12q13.2)EEF1A1 (6q13) / RPL41 (12q13.2)RPL41 (12q13.2) / CUX1 (7q22.1)
RPL41 (12q13.2) / NACA (12q13.3)RPL41 (12q13.2) / RPL7 (8q21.11)TNS1 (2q35) / RPL41 (12q13.2)
RPL41 12q13.2 / NACA 12q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  RPL41/NACA (12q13)


External links

Nomenclature
HGNC (Hugo)RPL41   10354
Cards
Entrez_Gene (NCBI)RPL41  6171  ribosomal protein L41
AliasesL41
GeneCards (Weizmann)RPL41
Ensembl hg19 (Hinxton)ENSG00000229117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229117 [Gene_View]  ENSG00000229117 [Sequence]  chr12:56116590-56117832 [Contig_View]  RPL41 [Vega]
ICGC DataPortalENSG00000229117
TCGA cBioPortalRPL41
AceView (NCBI)RPL41
Genatlas (Paris)RPL41
WikiGenes6171
SOURCE (Princeton)RPL41
Genetics Home Reference (NIH)RPL41
Genomic and cartography
GoldenPath hg38 (UCSC)RPL41  -     chr12:56116590-56117832 +  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL41  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblRPL41 - 12q13.2 [CytoView hg19]  RPL41 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIRPL41 [Mapview hg19]  RPL41 [Mapview hg38]
OMIM613315   
Gene and transcription
Genbank (Entrez)AF026844 BC014383 BC015984 BC017820 BC032611
RefSeq transcript (Entrez)NM_001035267 NM_021104
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL41
Cluster EST : UnigeneHs.660053 [ NCBI ]
CGAP (NCI)Hs.660053
Alternative Splicing GalleryENSG00000229117
Gene ExpressionRPL41 [ NCBI-GEO ]   RPL41 [ EBI - ARRAY_EXPRESS ]   RPL41 [ SEEK ]   RPL41 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6171
GTEX Portal (Tissue expression)RPL41
Human Protein AtlasENSG00000229117-RPL41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62945   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62945  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62945
Splice isoforms : SwissVarP62945
PhosPhoSitePlusP62945
Domains : Interpro (EBI)Ribosomal_L41   
Domain families : Pfam (Sanger)Ribosomal_L41 (PF05162)   
Domain families : Pfam (NCBI)pfam05162   
Conserved Domain (NCBI)RPL41
DMDM Disease mutations6171
Blocks (Seattle)RPL41
PDB (SRS)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
PDB (PDBSum)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
PDB (IMB)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
PDB (RSDB)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
Structural Biology KnowledgeBase4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
CATH (Classification of proteins structures)4UG0    4V6X    5A2Q    5AJ0    5LKS    5OA3    5VYC    6EK0   
SuperfamilyP62945
Human Protein Atlas [tissue]ENSG00000229117-RPL41 [tissue]
Peptide AtlasP62945
HPRD17999
IPIIPI00005147   
Protein Interaction databases
DIP (DOE-UCLA)P62945
IntAct (EBI)P62945
FunCoupENSG00000229117
BioGRIDRPL41
STRING (EMBL)RPL41
ZODIACRPL41
Ontologies - Pathways
QuickGOP62945
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  mRNA 3'-UTR binding  structural constituent of ribosome  cytosol  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  polysomal ribosome  mRNA 5'-UTR binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  mRNA 3'-UTR binding  structural constituent of ribosome  cytosol  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  polysomal ribosome  mRNA 5'-UTR binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL41
Atlas of Cancer Signalling NetworkRPL41
Wikipedia pathwaysRPL41
Orthology - Evolution
OrthoDB6171
GeneTree (enSembl)ENSG00000229117
Phylogenetic Trees/Animal Genes : TreeFamRPL41
HOVERGENP62945
HOGENOMP62945
Homologs : HomoloGeneRPL41
Homology/Alignments : Family Browser (UCSC)RPL41
Gene fusions - Rearrangements
Fusion : MitelmanRPL41/NACA [12q13.2/12q13.3]  
Fusion PortalRPL41 12q13.2 NACA 12q13.3 GBM
Fusion Cancer (Beijing)RPL41 [12q13.2]  -  CUX1 [7q22.1]  [FUSC001019]
Fusion Cancer (Beijing)RPL41 [12q13.2]  -  RPL7 [8q21.11]  [FUSC001093]
Fusion : QuiverRPL41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL41
dbVarRPL41
ClinVarRPL41
1000_GenomesRPL41 
Exome Variant ServerRPL41
ExAC (Exome Aggregation Consortium)ENSG00000229117
GNOMAD BrowserENSG00000229117
Varsome BrowserRPL41
Genetic variants : HAPMAP6171
Genomic Variants (DGV)RPL41 [DGVbeta]
DECIPHERRPL41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL41 
Mutations
ICGC Data PortalRPL41 
TCGA Data PortalRPL41 
Broad Tumor PortalRPL41
OASIS PortalRPL41 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDRPL41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL41
DgiDB (Drug Gene Interaction Database)RPL41
DoCM (Curated mutations)RPL41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL41 (select a term)
intoGenRPL41
Cancer3DRPL41(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613315   
Orphanet
DisGeNETRPL41
MedgenRPL41
Genetic Testing Registry RPL41
NextProtP62945 [Medical]
TSGene6171
GENETestsRPL41
Target ValidationRPL41
Huge Navigator RPL41 [HugePedia]
snp3D : Map Gene to Disease6171
BioCentury BCIQRPL41
ClinGenRPL41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6171
Chemical/Pharm GKB GenePA34750
Clinical trialRPL41
Miscellaneous
canSAR (ICR)RPL41 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL41
EVEXRPL41
GoPubMedRPL41
iHOPRPL41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:49:58 CEST 2018

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