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RPL5 (ribosomal protein L5)

Identity

Other namesDBA6
L5
PPP1R135
HGNC (Hugo) RPL5
LocusID (NCBI) 6125
Location 1p22.1
Location_base_pair Starts at 93297594 and ends at 93307481 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPL5   10360
Cards
Entrez_Gene (NCBI)RPL5  6125  ribosomal protein L5
GeneCards (Weizmann)RPL5
Ensembl (Hinxton)ENSG00000122406 [Gene_View]  chr1:93297594-93307481 [Contig_View]  RPL5 [Vega]
ICGC DataPortalENSG00000122406
AceView (NCBI)RPL5
Genatlas (Paris)RPL5
WikiGenes6125
SOURCE (Princeton)NM_000969
Genomic and cartography
GoldenPath (UCSC)RPL5  -  1p22.1   chr1:93297594-93307481 +  1p22.1   [Description]    (hg19-Feb_2009)
EnsemblRPL5 - 1p22.1 [CytoView]
Mapping of homologs : NCBIRPL5 [Mapview]
OMIM603634   612561   
Gene and transcription
Genbank (Entrez)AB055762 AB208980 AF113210 AK092963 AK095815
RefSeq transcript (Entrez)NM_000969
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_011779 NG_033051 NT_032977 NW_001838589 NW_004929290
Consensus coding sequences : CCDS (NCBI)RPL5
Cluster EST : UnigeneHs.532359 [ NCBI ]
CGAP (NCI)Hs.532359
Alternative Splicing : Fast-db (Paris)GSHG0000702
Alternative Splicing GalleryENSG00000122406
Gene ExpressionRPL5 [ NCBI-GEO ]     RPL5 [ SEEK ]   RPL5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46777 (Uniprot)
NextProtP46777  [Medical]
With graphics : InterProP46777
Splice isoforms : SwissVarP46777 (Swissvar)
Domains : Interpro (EBI)Rbsml_L5_euk/L18_arc    Rbsml_L5e/L18P_C    Ribosomal_L18/L5   
Related proteins : CluSTrP46777
Domain families : Pfam (Sanger)Ribosomal_L18_c (PF14204)    Ribosomal_L18p (PF00861)   
Domain families : Pfam (NCBI)pfam14204    pfam00861   
DMDM Disease mutations6125
Blocks (Seattle)P46777
PDB (SRS)3J3B   
PDB (PDBSum)3J3B   
PDB (IMB)3J3B   
PDB (RSDB)3J3B   
Human Protein AtlasENSG00000122406
Peptide AtlasP46777
HPRD04699
IPIIPI00000494   IPI00640037   
Protein Interaction databases
DIP (DOE-UCLA)P46777
IntAct (EBI)P46777
FunCoupENSG00000122406
BioGRIDRPL5
InParanoidP46777
Interologous Interaction database P46777
IntegromeDBRPL5
STRING (EMBL)RPL5
Ontologies - Pathways
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  5S rRNA binding  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  ribonucleoprotein complex  ribosomal large subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  rRNA processing  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  5S rRNA binding  gene expression  membrane  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  ribonucleoprotein complex  ribosomal large subunit biogenesis  cellular protein metabolic process  poly(A) RNA binding  extracellular vesicular exosome  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPL5
Wikipedia pathwaysRPL5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPL5
SNP (GeneSNP Utah)RPL5
SNP : HGBaseRPL5
Genetic variants : HAPMAPRPL5
1000_GenomesRPL5 
ICGC programENSG00000122406 
Cancer Gene: CensusRPL5 
CONAN: Copy Number AnalysisRPL5 
Somatic Mutations in Cancer : COSMICRPL5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
LOVD (Leiden Open Variation Database)Diamond-Blackfan Anemia
Mutations and Diseases : HGMDRPL5
OMIM603634    612561   
MedgenRPL5
GENETestsRPL5
Disease Genetic AssociationRPL5
Huge Navigator RPL5 [HugePedia]  RPL5 [HugeCancerGEM]
Genomic VariantsRPL5  RPL5 [DGVbeta]
Exome VariantRPL5
dbVarRPL5
ClinVarRPL5
snp3D : Map Gene to Disease6125
General knowledge
Homologs : HomoloGeneRPL5
Homology/Alignments : Family Browser (UCSC)RPL5
Phylogenetic Trees/Animal Genes : TreeFamRPL5
Chemical/Protein Interactions : CTD6125
Chemical/Pharm GKB GenePA34755
Clinical trialRPL5
Cancer Resource (Charite)ENSG00000122406
Other databases
Probes
Litterature
PubMed123 Pubmed reference(s) in Entrez
CoreMineRPL5
iHOPRPL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:14:08 CEST 2014

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