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RPL7 (ribosomal protein L7)

Identity

Alias_symbol (synonym)humL7-1
L7
Other alias
HGNC (Hugo) RPL7
LocusID (NCBI) 6129
Atlas_Id 52191
Location 8q21.11  [Link to chromosome band 8q21]
Location_base_pair Starts at 73290639 and ends at 73293634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPL41 (12q13.2) / RPL7 (8q21.11)RPL7 (8q21.11) / AP1G2 (14q11.2)SLC4A2 (7q36.1) / RPL7 (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL7   10363
Cards
Entrez_Gene (NCBI)RPL7  6129  ribosomal protein L7
AliasesL7; humL7-1
GeneCards (Weizmann)RPL7
Ensembl hg19 (Hinxton)ENSG00000147604 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147604 [Gene_View]  chr8:73290639-73293634 [Contig_View]  RPL7 [Vega]
ICGC DataPortalENSG00000147604
TCGA cBioPortalRPL7
AceView (NCBI)RPL7
Genatlas (Paris)RPL7
WikiGenes6129
SOURCE (Princeton)RPL7
Genetics Home Reference (NIH)RPL7
Genomic and cartography
GoldenPath hg38 (UCSC)RPL7  -     chr8:73290639-73293634 -  8q21.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL7  -     8q21.11   [Description]    (hg19-Feb_2009)
EnsemblRPL7 - 8q21.11 [CytoView hg19]  RPL7 - 8q21.11 [CytoView hg38]
Mapping of homologs : NCBIRPL7 [Mapview hg19]  RPL7 [Mapview hg38]
OMIM604166   
Gene and transcription
Genbank (Entrez)AK225246 AK225254 AK291119 AK313365 BC006095
RefSeq transcript (Entrez)NM_000971
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL7
Cluster EST : UnigeneHs.571841 [ NCBI ]
CGAP (NCI)Hs.571841
Alternative Splicing GalleryENSG00000147604
Gene ExpressionRPL7 [ NCBI-GEO ]   RPL7 [ EBI - ARRAY_EXPRESS ]   RPL7 [ SEEK ]   RPL7 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6129
GTEX Portal (Tissue expression)RPL7
Protein : pattern, domain, 3D structure
UniProt/SwissProtP18124   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP18124  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP18124
Splice isoforms : SwissVarP18124
PhosPhoSitePlusP18124
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L30 (PS00634)   
Domains : Interpro (EBI)Ribosomal_L30_CS    Ribosomal_L30_ferredoxin-like    Ribosomal_L30_N    Ribosomal_L7_euk   
Domain families : Pfam (Sanger)Ribosomal_L30 (PF00327)    Ribosomal_L30_N (PF08079)   
Domain families : Pfam (NCBI)pfam00327    pfam08079   
Conserved Domain (NCBI)RPL7
DMDM Disease mutations6129
Blocks (Seattle)RPL7
PDB (SRS)4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP18124
Human Protein AtlasENSG00000147604
Peptide AtlasP18124
HPRD05004
Protein Interaction databases
DIP (DOE-UCLA)P18124
IntAct (EBI)P18124
FunCoupENSG00000147604
BioGRIDRPL7
STRING (EMBL)RPL7
ZODIACRPL7
Ontologies - Pathways
QuickGOP18124
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cytoplasmic translation  DNA binding  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  polysome  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  ribosomal large subunit biogenesis  protein homodimerization activity  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  cytoplasmic translation  DNA binding  RNA binding  mRNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  polysome  focal adhesion  rRNA processing  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  cytosolic large ribosomal subunit  intracellular ribonucleoprotein complex  ribosomal large subunit biogenesis  protein homodimerization activity  extracellular exosome  
Pathways : KEGGRibosome   
NDEx NetworkRPL7
Atlas of Cancer Signalling NetworkRPL7
Wikipedia pathwaysRPL7
Orthology - Evolution
OrthoDB6129
GeneTree (enSembl)ENSG00000147604
Phylogenetic Trees/Animal Genes : TreeFamRPL7
HOVERGENP18124
HOGENOMP18124
Homologs : HomoloGeneRPL7
Homology/Alignments : Family Browser (UCSC)RPL7
Gene fusions - Rearrangements
Fusion Cancer (Beijing)RPL41 [12q13.2]  -  RPL7 [8q21.11]  [FUSC001093]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL7
dbVarRPL7
ClinVarRPL7
1000_GenomesRPL7 
Exome Variant ServerRPL7
ExAC (Exome Aggregation Consortium)RPL7 (select the gene name)
Genetic variants : HAPMAP6129
Genomic Variants (DGV)RPL7 [DGVbeta]
DECIPHERRPL7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL7 
Mutations
ICGC Data PortalRPL7 
TCGA Data PortalRPL7 
Broad Tumor PortalRPL7
OASIS PortalRPL7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL7
DgiDB (Drug Gene Interaction Database)RPL7
DoCM (Curated mutations)RPL7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL7 (select a term)
intoGenRPL7
Cancer3DRPL7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604166   
Orphanet
MedgenRPL7
Genetic Testing Registry RPL7
NextProtP18124 [Medical]
TSGene6129
GENETestsRPL7
Target ValidationRPL7
Huge Navigator RPL7 [HugePedia]
snp3D : Map Gene to Disease6129
BioCentury BCIQRPL7
ClinGenRPL7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6129
Chemical/Pharm GKB GenePA34759
Clinical trialRPL7
Miscellaneous
canSAR (ICR)RPL7 (select the gene name)
Probes
Litterature
PubMed85 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL7
EVEXRPL7
GoPubMedRPL7
iHOPRPL7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:53:50 CEST 2017

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