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RPL7A (ribosomal protein L7a)

Identity

Alias_symbol (synonym)SURF3
TRUP
L7A
Other alias
HGNC (Hugo) RPL7A
LocusID (NCBI) 6130
Atlas_Id 42159
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133348214 and ends at 133351425 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GAS5 (1q25.1) / RPL7A (9q34.2)RPL7A (9q34.2) / CDH1 (16q22.1)RPL7A (9q34.2) / NTRK1 (1q23.1)
RPL7A (9q34.2) / RDX (11q22.3)RPL7A (9q34.2) / ST7-AS1 (7q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL7A   10364
Cards
Entrez_Gene (NCBI)RPL7A  6130  ribosomal protein L7a
AliasesL7A; SURF3; TRUP
GeneCards (Weizmann)RPL7A
Ensembl hg19 (Hinxton)ENSG00000148303 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148303 [Gene_View]  ENSG00000148303 [Sequence]  chr9:133348214-133351425 [Contig_View]  RPL7A [Vega]
ICGC DataPortalENSG00000148303
TCGA cBioPortalRPL7A
AceView (NCBI)RPL7A
Genatlas (Paris)RPL7A
WikiGenes6130
SOURCE (Princeton)RPL7A
Genetics Home Reference (NIH)RPL7A
Genomic and cartography
GoldenPath hg38 (UCSC)RPL7A  -     chr9:133348214-133351425 +  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL7A  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblRPL7A - 9q34.2 [CytoView hg19]  RPL7A - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIRPL7A [Mapview hg19]  RPL7A [Mapview hg38]
OMIM185640   
Gene and transcription
Genbank (Entrez)AB056665 AK222534 AK291123 AK311743 BC005128
RefSeq transcript (Entrez)NM_000972
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL7A
Cluster EST : UnigeneHs.499839 [ NCBI ]
CGAP (NCI)Hs.499839
Alternative Splicing GalleryENSG00000148303
Gene ExpressionRPL7A [ NCBI-GEO ]   RPL7A [ EBI - ARRAY_EXPRESS ]   RPL7A [ SEEK ]   RPL7A [ MEM ]
Gene Expression Viewer (FireBrowse)RPL7A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6130
GTEX Portal (Tissue expression)RPL7A
Human Protein AtlasENSG00000148303-RPL7A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP62424   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP62424  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP62424
Splice isoforms : SwissVarP62424
PhosPhoSitePlusP62424
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L7AE (PS01082)   
Domains : Interpro (EBI)L30e-like    Ribosomal_L7A/L8    Ribosomal_L7A/L8_sf    Ribosomal_L7Ae/L30e/S12e/Gad45    Ribosomal_L7Ae/L8/Nhp2    Ribosomal_L7Ae_CS   
Domain families : Pfam (Sanger)Ribosomal_L7Ae (PF01248)   
Domain families : Pfam (NCBI)pfam01248   
Conserved Domain (NCBI)RPL7A
DMDM Disease mutations6130
Blocks (Seattle)RPL7A
PDB (SRS)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
PDB (PDBSum)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
PDB (IMB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
PDB (RSDB)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
Structural Biology KnowledgeBase4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
SCOP (Structural Classification of Proteins)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
CATH (Classification of proteins structures)4UG0    4V6X    5AJ0    5LKS    5T2C    6EK0   
SuperfamilyP62424
Human Protein Atlas [tissue]ENSG00000148303-RPL7A [tissue]
Peptide AtlasP62424
HPRD01712
IPIIPI00299573   IPI00478896   IPI00642454   
Protein Interaction databases
DIP (DOE-UCLA)P62424
IntAct (EBI)P62424
FunCoupENSG00000148303
BioGRIDRPL7A
STRING (EMBL)RPL7A
ZODIACRPL7A
Ontologies - Pathways
QuickGOP62424
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  polysomal ribosome  synapse  cadherin binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  maturation of LSU-rRNA  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleus  nucleolus  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  cytosolic large ribosomal subunit  cytosolic large ribosomal subunit  polysomal ribosome  synapse  cadherin binding  
Pathways : KEGGRibosome   
NDEx NetworkRPL7A
Atlas of Cancer Signalling NetworkRPL7A
Wikipedia pathwaysRPL7A
Orthology - Evolution
OrthoDB6130
GeneTree (enSembl)ENSG00000148303
Phylogenetic Trees/Animal Genes : TreeFamRPL7A
HOVERGENP62424
HOGENOMP62424
Homologs : HomoloGeneRPL7A
Homology/Alignments : Family Browser (UCSC)RPL7A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)GAS5 [1q25.1]  -  RPL7A [9q34.2]  [FUSC001115]
Fusion : QuiverRPL7A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL7A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL7A
dbVarRPL7A
ClinVarRPL7A
1000_GenomesRPL7A 
Exome Variant ServerRPL7A
ExAC (Exome Aggregation Consortium)ENSG00000148303
GNOMAD BrowserENSG00000148303
Varsome BrowserRPL7A
Genetic variants : HAPMAP6130
Genomic Variants (DGV)RPL7A [DGVbeta]
DECIPHERRPL7A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL7A 
Mutations
ICGC Data PortalRPL7A 
TCGA Data PortalRPL7A 
Broad Tumor PortalRPL7A
OASIS PortalRPL7A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL7A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL7A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPL7A
DgiDB (Drug Gene Interaction Database)RPL7A
DoCM (Curated mutations)RPL7A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL7A (select a term)
intoGenRPL7A
Cancer3DRPL7A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM185640   
Orphanet
DisGeNETRPL7A
MedgenRPL7A
Genetic Testing Registry RPL7A
NextProtP62424 [Medical]
TSGene6130
GENETestsRPL7A
Target ValidationRPL7A
Huge Navigator RPL7A [HugePedia]
snp3D : Map Gene to Disease6130
BioCentury BCIQRPL7A
ClinGenRPL7A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6130
Chemical/Pharm GKB GenePA34760
Clinical trialRPL7A
Miscellaneous
canSAR (ICR)RPL7A (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL7A
EVEXRPL7A
GoPubMedRPL7A
iHOPRPL7A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:36:27 CET 2018

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