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RPL7L1 (ribosomal protein L7 like 1)

Identity

Alias (NCBI)dJ475N16.4
HGNC (Hugo) RPL7L1
HGNC Alias symbdJ475N16.4
HGNC Previous nameribosomal protein L7-like 1
LocusID (NCBI) 285855
Atlas_Id 54591
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42879616 and ends at 42889934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RPL7L1 (6p21.1) / CDK8 (13q12.13)RPL7L1 (6p21.1) / CRYBB2P1 (22q11.23)RPL7L1 (6p21.1) / MXRA7 (17q25.1)
SEMA4A (1q22) / RPL7L1 (6p21.1)UGDH (4p14) / RPL7L1 (6p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)RPL7L1   21370
Cards
Entrez_Gene (NCBI)RPL7L1    ribosomal protein L7 like 1
AliasesdJ475N16.4
GeneCards (Weizmann)RPL7L1
Ensembl hg19 (Hinxton)ENSG00000146223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146223 [Gene_View]  ENSG00000146223 [Sequence]  chr6:42879616-42889934 [Contig_View]  RPL7L1 [Vega]
ICGC DataPortalENSG00000146223
TCGA cBioPortalRPL7L1
AceView (NCBI)RPL7L1
Genatlas (Paris)RPL7L1
SOURCE (Princeton)RPL7L1
Genetics Home Reference (NIH)RPL7L1
Genomic and cartography
GoldenPath hg38 (UCSC)RPL7L1  -     chr6:42879616-42889934 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL7L1  -     6p21.1   [Description]    (hg19-Feb_2009)
GoldenPathRPL7L1 - 6p21.1 [CytoView hg19]  RPL7L1 - 6p21.1 [CytoView hg38]
ImmunoBaseENSG00000146223
Genome Data Viewer NCBIRPL7L1 [Mapview hg19]  
OMIM617417   
Gene and transcription
Genbank (Entrez)AK021904 AK074339 AK091341 AK098059 AK291310
RefSeq transcript (Entrez)NM_001366481 NM_198486
Consensus coding sequences : CCDS (NCBI)RPL7L1
Gene ExpressionRPL7L1 [ NCBI-GEO ]   RPL7L1 [ EBI - ARRAY_EXPRESS ]   RPL7L1 [ SEEK ]   RPL7L1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL7L1 [ Firebrowse - Broad ]
GenevisibleExpression of RPL7L1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285855
GTEX Portal (Tissue expression)RPL7L1
Human Protein AtlasENSG00000146223-RPL7L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6DKI1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6DKI1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6DKI1
PhosPhoSitePlusQ6DKI1
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L30 (PS00634)   
Domains : Interpro (EBI)L30_ferredoxin-like_sf    Ribosomal_L30_central_dom_arc    Ribosomal_L30_CS    Ribosomal_L30_ferredoxin-like    Ribosomal_L30_N    Ribosomal_L7/L30    Ribosomal_L7_euk    Ribosomal_L7_euk_arc   
Domain families : Pfam (Sanger)Ribosomal_L30 (PF00327)    Ribosomal_L30_N (PF08079)   
Domain families : Pfam (NCBI)pfam00327    pfam08079   
Conserved Domain (NCBI)RPL7L1
SuperfamilyQ6DKI1
AlphaFold pdb e-kbQ6DKI1   
Human Protein Atlas [tissue]ENSG00000146223-RPL7L1 [tissue]
HPRD18000
Protein Interaction databases
DIP (DOE-UCLA)Q6DKI1
IntAct (EBI)Q6DKI1
BioGRIDRPL7L1
STRING (EMBL)RPL7L1
ZODIACRPL7L1
Ontologies - Pathways
QuickGOQ6DKI1
Ontology : AmiGOmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  blastocyst formation  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleolus  cytosolic large ribosomal subunit  
Ontology : EGO-EBImaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  blastocyst formation  RNA binding  RNA binding  structural constituent of ribosome  protein binding  nucleolus  cytosolic large ribosomal subunit  
NDEx NetworkRPL7L1
Atlas of Cancer Signalling NetworkRPL7L1
Wikipedia pathwaysRPL7L1
Orthology - Evolution
OrthoDB285855
GeneTree (enSembl)ENSG00000146223
Phylogenetic Trees/Animal Genes : TreeFamRPL7L1
Homologs : HomoloGeneRPL7L1
Homology/Alignments : Family Browser (UCSC)RPL7L1
Gene fusions - Rearrangements
Fusion : MitelmanRPL7L1/CDK8 [6p21.1/13q12.13]  
Fusion : QuiverRPL7L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL7L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL7L1
dbVarRPL7L1
ClinVarRPL7L1
MonarchRPL7L1
1000_GenomesRPL7L1 
Exome Variant ServerRPL7L1
GNOMAD BrowserENSG00000146223
Varsome BrowserRPL7L1
ACMGRPL7L1 variants
VarityQ6DKI1
Genomic Variants (DGV)RPL7L1 [DGVbeta]
DECIPHERRPL7L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL7L1 
Mutations
ICGC Data PortalRPL7L1 
TCGA Data PortalRPL7L1 
Broad Tumor PortalRPL7L1
OASIS PortalRPL7L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL7L1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DRPL7L1
Mutations and Diseases : HGMDRPL7L1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaRPL7L1
DgiDB (Drug Gene Interaction Database)RPL7L1
DoCM (Curated mutations)RPL7L1
CIViC (Clinical Interpretations of Variants in Cancer)RPL7L1
Cancer3DRPL7L1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617417   
Orphanet
DisGeNETRPL7L1
MedgenRPL7L1
Genetic Testing Registry RPL7L1
NextProtQ6DKI1 [Medical]
GENETestsRPL7L1
Target ValidationRPL7L1
Huge Navigator RPL7L1 [HugePedia]
ClinGenRPL7L1
Clinical trials, drugs, therapy
MyCancerGenomeRPL7L1
Protein Interactions : CTDRPL7L1
Pharm GKB GenePA134977157
PharosQ6DKI1
Clinical trialRPL7L1
Miscellaneous
canSAR (ICR)RPL7L1
HarmonizomeRPL7L1
DataMed IndexRPL7L1
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXRPL7L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:29:32 CEST 2021

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