Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

RPL9 (ribosomal protein L9)

Identity

Other aliasL9
NPC-A-16
HGNC (Hugo) RPL9
LocusID (NCBI) 6133
Atlas_Id 56824
Location 4p14  [Link to chromosome band 4p14]
Location_base_pair Starts at 39454125 and ends at 39458948 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CNDP2 (18q22.3) / RPL9 (4p14)RPL9 (4p14) / LIAS (4p14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPL9   10369
Cards
Entrez_Gene (NCBI)RPL9  6133  ribosomal protein L9
AliasesL9; NPC-A-16
GeneCards (Weizmann)RPL9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:39454125-39458948 [Contig_View]  RPL9 [Vega]
TCGA cBioPortalRPL9
AceView (NCBI)RPL9
Genatlas (Paris)RPL9
WikiGenes6133
SOURCE (Princeton)RPL9
Genetics Home Reference (NIH)RPL9
Genomic and cartography
GoldenPath hg38 (UCSC)RPL9  -     chr4:39454125-39458948 -  4p14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)RPL9  -     4p14   [Description]    (hg19-Feb_2009)
EnsemblRPL9 - 4p14 [CytoView hg19]  RPL9 - 4p14 [CytoView hg38]
Mapping of homologs : NCBIRPL9 [Mapview hg19]  RPL9 [Mapview hg38]
OMIM603686   
Gene and transcription
Genbank (Entrez)AB062431 AK130966 AK297178 AK303908 AK312241
RefSeq transcript (Entrez)NM_000661 NM_001024921
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)RPL9
Cluster EST : UnigeneHs.730597 [ NCBI ]
CGAP (NCI)Hs.730597
Gene ExpressionRPL9 [ NCBI-GEO ]   RPL9 [ EBI - ARRAY_EXPRESS ]   RPL9 [ SEEK ]   RPL9 [ MEM ]
Gene Expression Viewer (FireBrowse)RPL9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6133
GTEX Portal (Tissue expression)RPL9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP32969   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP32969  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP32969
Splice isoforms : SwissVarP32969
PhosPhoSitePlusP32969
Domaine pattern : Prosite (Expaxy)RIBOSOMAL_L6_2 (PS00700)   
Domains : Interpro (EBI)Ribosomal_L6    Ribosomal_L6_a/b-dom    Ribosomal_L6_CS2   
Domain families : Pfam (Sanger)Ribosomal_L6 (PF00347)   
Domain families : Pfam (NCBI)pfam00347   
Conserved Domain (NCBI)RPL9
DMDM Disease mutations6133
Blocks (Seattle)RPL9
PDB (SRS)2CQL    4UG0    4V6X    5AJ0    5T2C   
PDB (PDBSum)2CQL    4UG0    4V6X    5AJ0    5T2C   
PDB (IMB)2CQL    4UG0    4V6X    5AJ0    5T2C   
PDB (RSDB)2CQL    4UG0    4V6X    5AJ0    5T2C   
Structural Biology KnowledgeBase2CQL    4UG0    4V6X    5AJ0    5T2C   
SCOP (Structural Classification of Proteins)2CQL    4UG0    4V6X    5AJ0    5T2C   
CATH (Classification of proteins structures)2CQL    4UG0    4V6X    5AJ0    5T2C   
SuperfamilyP32969
Peptide AtlasP32969
IPIIPI00031691   IPI00909133   IPI00968128   IPI00966707   IPI00965303   IPI00967876   
Protein Interaction databases
DIP (DOE-UCLA)P32969
IntAct (EBI)P32969
BioGRIDRPL9
STRING (EMBL)RPL9
ZODIACRPL9
Ontologies - Pathways
QuickGOP32969
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  rRNA binding  cytosolic large ribosomal subunit  extracellular matrix  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  RNA binding  structural constituent of ribosome  structural constituent of ribosome  protein binding  nucleus  cytosol  ribosome  focal adhesion  rRNA processing  translation  translational initiation  SRP-dependent cotranslational protein targeting to membrane  membrane  viral transcription  rRNA binding  cytosolic large ribosomal subunit  extracellular matrix  
Pathways : KEGGRibosome   
NDEx NetworkRPL9
Atlas of Cancer Signalling NetworkRPL9
Wikipedia pathwaysRPL9
Orthology - Evolution
OrthoDB6133
Phylogenetic Trees/Animal Genes : TreeFamRPL9
HOVERGENP32969
HOGENOMP32969
Homologs : HomoloGeneRPL9
Homology/Alignments : Family Browser (UCSC)RPL9
Gene fusions - Rearrangements
Fusion: Tumor Portal RPL9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerRPL9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPL9
dbVarRPL9
ClinVarRPL9
1000_GenomesRPL9 
Exome Variant ServerRPL9
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP6133
Genomic Variants (DGV)RPL9 [DGVbeta]
DECIPHERRPL9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisRPL9 
Mutations
ICGC Data PortalRPL9 
TCGA Data PortalRPL9 
Broad Tumor PortalRPL9
OASIS PortalRPL9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPL9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDRPL9
BioMutasearch RPL9
DgiDB (Drug Gene Interaction Database)RPL9
DoCM (Curated mutations)RPL9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPL9 (select a term)
intoGenRPL9
Cancer3DRPL9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603686   
Orphanet
MedgenRPL9
Genetic Testing Registry RPL9
NextProtP32969 [Medical]
TSGene6133
GENETestsRPL9
Target ValidationRPL9
Huge Navigator RPL9 [HugePedia]
snp3D : Map Gene to Disease6133
BioCentury BCIQRPL9
ClinGenRPL9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6133
Chemical/Pharm GKB GenePA34769
Clinical trialRPL9
Miscellaneous
canSAR (ICR)RPL9 (select the gene name)
Probes
Litterature
PubMed64 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPL9
EVEXRPL9
GoPubMedRPL9
iHOPRPL9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:09:16 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.