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RPLP1 (ribosomal protein, large, P1)

Identity

Other namesLP1
P1
RPP1
HGNC (Hugo) RPLP1
LocusID (NCBI) 6176
Atlas_Id 52108
Location 15q23
Location_base_pair Starts at 69745159 and ends at 69747884 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)RPLP1   10372
Cards
Entrez_Gene (NCBI)RPLP1  6176  ribosomal protein, large, P1
GeneCards (Weizmann)RPLP1
Ensembl hg19 (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
ICGC DataPortalENSG00000137818
TCGA cBioPortalRPLP1
AceView (NCBI)RPLP1
Genatlas (Paris)RPLP1
WikiGenes6176
SOURCE (Princeton)RPLP1
Genomic and cartography
GoldenPath hg19 (UCSC)RPLP1  -     chr15:69745159-69747884 +  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPLP1  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblRPLP1 - 15q23 [CytoView hg19]  RPLP1 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIRPLP1 [Mapview hg19]  RPLP1 [Mapview hg38]
OMIM180520   
Gene and transcription
Genbank (Entrez)AK026579 AK130958 AK311456 AY303789 BC003369
RefSeq transcript (Entrez)NM_001003 NM_213725
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)RPLP1
Cluster EST : UnigeneHs.356502 [ NCBI ]
CGAP (NCI)Hs.356502
Alternative Splicing : Fast-db (Paris)GSHG0009970
Alternative Splicing GalleryENSG00000137818
Gene ExpressionRPLP1 [ NCBI-GEO ]     RPLP1 [ SEEK ]   RPLP1 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05386 (Uniprot)
NextProtP05386  [Medical]  [Publications]
With graphics : InterProP05386
Splice isoforms : SwissVarP05386 (Swissvar)
Domains : Interpro (EBI)Ribosomal_L12   
Related proteins : CluSTrP05386
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations6176
Blocks (Seattle)P05386
PDB (SRS)2LBF    4BEH    4V6X   
PDB (PDBSum)2LBF    4BEH    4V6X   
PDB (IMB)2LBF    4BEH    4V6X   
PDB (RSDB)2LBF    4BEH    4V6X   
Human Protein AtlasENSG00000137818
Peptide AtlasP05386
HPRD01611
IPIIPI00008527   IPI00103904   IPI00412779   
Protein Interaction databases
DIP (DOE-UCLA)P05386
IntAct (EBI)P05386
FunCoupENSG00000137818
BioGRIDRPLP1
IntegromeDBRPLP1
STRING (EMBL)RPLP1
Ontologies - Pathways
QuickGOP05386
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  extracellular exosome  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  focal adhesion  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  extracellular exosome  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPLP1
DoCM (Curated mutations)RPLP1
Wikipedia pathwaysRPLP1
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerRPLP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPLP1
dbVarRPLP1
ClinVarRPLP1
1000_GenomesRPLP1 
Exome Variant ServerRPLP1
SNP (GeneSNP Utah)RPLP1
SNP : HGBaseRPLP1
Genetic variants : HAPMAPRPLP1
Genomic Variants (DGV)RPLP1 [DGVbeta]
Mutations
ICGC Data PortalRPLP1 
TCGA Data PortalRPLP1 
Tumor PortalRPLP1
Somatic Mutations in Cancer : COSMICRPLP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:69745159-69747884
CONAN: Copy Number AnalysisRPLP1 
Mutations and Diseases : HGMDRPLP1
OMIM180520   
MedgenRPLP1
NextProtP05386 [Medical]
GENETestsRPLP1
Disease Genetic AssociationRPLP1
Huge Navigator RPLP1 [HugePedia]  RPLP1 [HugeCancerGEM]
snp3D : Map Gene to Disease6176
DGIdb (Drug Gene Interaction db)RPLP1
BioCentury BCIQRPLP1
General knowledge
Homologs : HomoloGeneRPLP1
Homology/Alignments : Family Browser (UCSC)RPLP1
Phylogenetic Trees/Animal Genes : TreeFamRPLP1
Chemical/Protein Interactions : CTD6176
Chemical/Pharm GKB GenePA34775
Clinical trialRPLP1
Cancer Resource (Charite)ENSG00000137818
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
CoreMineRPLP1
GoPubMedRPLP1
iHOPRPLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 12:13:41 CEST 2015

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