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RPLP1 (ribosomal protein, large, P1)

Identity

Other namesLP1
P1
RPP1
HGNC (Hugo) RPLP1
LocusID (NCBI) 6176
Location 15q23
Location_base_pair Starts at 69745159 and ends at 69747884 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)RPLP1   10372
Entrez_Gene (NCBI)RPLP1  6176  ribosomal protein, large, P1
Cards
GeneCards (Weizmann)RPLP1
Ensembl (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
AceView (NCBI)RPLP1
Genatlas (Paris)RPLP1
SOURCE (Stanford)NM_001003 NM_213725
Genomic and cartography
GoldenPath (UCSC)RPLP1  -  15q23   chr15:69745159-69747884 +  15q23   [Description]    (hg19-Feb_2009)
EnsemblRPLP1 - 15q23 [CytoView]
Mapping of homologs : NCBIRPLP1 [Mapview]
OMIM180520   
Gene and transcription
Genbank (Entrez)AK026579 AK130958 AY303789 BC003369 BC007590
RefSeq transcript (SRS)NM_001003 NM_213725
RefSeq transcript (Entrez)NM_001003 NM_213725
RefSeq genomic (SRS)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004078084
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004078084
Consensus coding sequences : CCDS (NCBI)RPLP1
Cluster EST : UnigeneHs.356502 [ SRS ] Hs.356502 [ NCBI ]
CGAP (NCI)Hs.356502
Alternative Splicing : Fast-db (Paris)GSHG0009970
Alternative Splicing GalleryENSG00000137818
Gene ExpressionRPLP1 [ NCBI-GEO ]   RPLP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05386 (SRS) P05386 (Uniprot)
NextProtP05386
With graphics : InterProP05386
Splice isoforms : SwissVarP05386(Swissvar)
Domains : Interpro (SRS)Ribosomal_60S   
Domains : Interpro (EBI)Ribosomal_60S   
Related proteins : CluSTrP05386
Domain families : Pfam (SRS)Ribosomal_60s (PF00428)   
Domain families : Pfam (Sanger)Ribosomal_60s (PF00428)   
Domain families : Pfam (NCBI)pfam00428   
DMDM6176
Blocks (Seattle)P05386
PDB (SRS)2LBF   
PDB (PDBSum)2LBF   
PDB (IMB)2LBF   
PDB (RSDB)2LBF   
Human Protein AtlasENSG00000137818
HPRD01611
IPIIPI00008527   IPI00103904   IPI00412779   
Protein Interaction databases
DIP (DOE-UCLA)P05386
IntAct (EBI)P05386
FunCoupENSG00000137818
REACTOMERPLP1
Protein Interaction Database6176
BioGRIDRPLP1
InParanoidP05386
Interologous Interaction database P05386
IntegromeDBRPLP1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPLP1
SNP (GeneSNP Utah)RPLP1
SNP : HGBaseRPLP1
Genetic variants : HAPMAPRPLP1
Somatic Mutations in Cancer : COSMICRPLP1 
CONAN: Copy Number AnalysisRPLP1 
Mutations and Diseases : HGMDRPLP1
OMIM180520   
GENETests180520   
Disease Genetic AssociationRPLP1
Huge Navigator RPLP1 [HugePedia]  RPLP1 [HugeCancerGEM]
Genomic VariantsRPLP1  RPLP1 [DGVbeta]
snp3D : Map Gene to Disease6176
General knowledge
Homologs : HomoloGeneRPLP1
Homology/Alignments : Family Browser (UCSC)RPLP1
Phylogenetic Trees/Animal Genes : TreeFamRPLP1
Chemical/Protein Interactions : CTD6176
Chemical/Pharm GKB GenePA34775
Clinical trialRPLP1
Cancer Resource (Charite)ENSG00000137818
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral reproduction  RNA metabolic process  mRNA metabolic process  viral infectious cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral reproduction  RNA metabolic process  mRNA metabolic process  viral infectious cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Pathways : KEGGRibosome
Other databases
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
PubGeneRPLP1
iHOPRPLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:27:28 CEST 2013
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