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RPLP1 (ribosomal protein, large, P1)

Identity

Other namesLP1
P1
RPP1
HGNC (Hugo) RPLP1
LocusID (NCBI) 6176
Location 15q23
Location_base_pair Starts at 69745159 and ends at 69747884 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)RPLP1   10372
Cards
Entrez_Gene (NCBI)RPLP1  6176  ribosomal protein, large, P1
GeneCards (Weizmann)RPLP1
Ensembl (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
ICGC DataPortalENSG00000137818
cBioPortalRPLP1
AceView (NCBI)RPLP1
Genatlas (Paris)RPLP1
WikiGenes6176
SOURCE (Princeton)NM_001003 NM_213725
Genomic and cartography
GoldenPath (UCSC)RPLP1  -  15q23   chr15:69745159-69747884 +  15q23   [Description]    (hg19-Feb_2009)
EnsemblRPLP1 - 15q23 [CytoView]
Mapping of homologs : NCBIRPLP1 [Mapview]
OMIM180520   
Gene and transcription
Genbank (Entrez)AK026579 AK130958 AY303789 BC003369 BC007590
RefSeq transcript (Entrez)NM_001003 NM_213725
RefSeq genomic (Entrez)AC_000147 NC_000015 NC_018926 NT_010194 NW_001838218 NW_004929398
Consensus coding sequences : CCDS (NCBI)RPLP1
Cluster EST : UnigeneHs.356502 [ NCBI ]
CGAP (NCI)Hs.356502
Alternative Splicing : Fast-db (Paris)GSHG0009970
Alternative Splicing GalleryENSG00000137818
Gene ExpressionRPLP1 [ NCBI-GEO ]     RPLP1 [ SEEK ]   RPLP1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05386 (Uniprot)
NextProtP05386  [Medical]
With graphics : InterProP05386
Splice isoforms : SwissVarP05386 (Swissvar)
Domains : Interpro (EBI)Ribosomal_L10/L12 [organisation]   Ribosomal_L12 [organisation]  
Related proteins : CluSTrP05386
Domain families : Pfam (Sanger)Ribosomal_60s (PF00428)   
Domain families : Pfam (NCBI)pfam00428   
DMDM Disease mutations6176
Blocks (Seattle)P05386
PDB (SRS)2LBF    3J3B   
PDB (PDBSum)2LBF    3J3B   
PDB (IMB)2LBF    3J3B   
PDB (RSDB)2LBF    3J3B   
Human Protein AtlasENSG00000137818 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP05386
HPRD01611
IPIIPI00008527   IPI00103904   IPI00412779   
Protein Interaction databases
DIP (DOE-UCLA)P05386
IntAct (EBI)P05386
FunCoupENSG00000137818
BioGRIDRPLP1
InParanoidP05386
Interologous Interaction database P05386
IntegromeDBRPLP1
STRING (EMBL)RPLP1
Ontologies - Pathways
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  RNA binding  structural constituent of ribosome  protein binding  cytoplasm  cytosol  translation  translation  translational initiation  translational elongation  translational termination  SRP-dependent cotranslational protein targeting to membrane  gene expression  viral process  RNA metabolic process  mRNA metabolic process  viral life cycle  viral transcription  cytosolic large ribosomal subunit  cellular protein metabolic process  
Pathways : KEGGRibosome   
Protein Interaction DatabaseRPLP1
Wikipedia pathwaysRPLP1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)RPLP1
snp3D : Map Gene to Disease6176
SNP (GeneSNP Utah)RPLP1
SNP : HGBaseRPLP1
Genetic variants : HAPMAPRPLP1
Exome VariantRPLP1
1000_GenomesRPLP1 
ICGC programENSG00000137818 
Somatic Mutations in Cancer : COSMICRPLP1 
CONAN: Copy Number AnalysisRPLP1 
Mutations and Diseases : HGMDRPLP1
Genomic VariantsRPLP1  RPLP1 [DGVbeta]
dbVarRPLP1
ClinVarRPLP1
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM180520   
MedgenRPLP1
GENETestsRPLP1
Disease Genetic AssociationRPLP1
Huge Navigator RPLP1 [HugePedia]  RPLP1 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneRPLP1
Homology/Alignments : Family Browser (UCSC)RPLP1
Phylogenetic Trees/Animal Genes : TreeFamRPLP1
Chemical/Protein Interactions : CTD6176
Chemical/Pharm GKB GenePA34775
Clinical trialRPLP1
Cancer Resource (Charite)ENSG00000137818
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineRPLP1
iHOPRPLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:17:23 CEST 2014

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