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RPLP1 (ribosomal protein lateral stalk subunit P1)

Identity

Other namesLP1
P1
RPP1
HGNC (Hugo) RPLP1
LocusID (NCBI) 6176
Atlas_Id 52108
Location 15q23
Location_base_pair Starts at 69745159 and ends at 69747884 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COPB2 (3q23) / RPLP1 (15q23)MPO (17q22) / RPLP1 (15q23)Metazoa_SRP () / RPLP1 (15q23)
RPLP1 (15q23) / ASH2L (8p11.23)RPLP1 (15q23) / DMD (Xp21.2)RPLP1 (15q23) / KIF23 (15q23)
RPLP1 (15q23) / LAMA5 (20q13.33)RPLP1 (15q23) / RANBP2 (2q12.3)RPLP1 (15q23) / SIAH2 (3q25.1)
WDR33 (2q14.3) / RPLP1 (15q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)RPLP1   10372
Cards
Entrez_Gene (NCBI)RPLP1  6176  ribosomal protein lateral stalk subunit P1
GeneCards (Weizmann)RPLP1
Ensembl hg19 (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000137818 [Gene_View]  chr15:69745159-69747884 [Contig_View]  RPLP1 [Vega]
ICGC DataPortalENSG00000137818
TCGA cBioPortalRPLP1
AceView (NCBI)RPLP1
Genatlas (Paris)RPLP1
WikiGenes6176
SOURCE (Princeton)RPLP1
Genomic and cartography
GoldenPath hg19 (UCSC)RPLP1  -     chr15:69745159-69747884 +  15q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)RPLP1  -     15q23   [Description]    (hg38-Dec_2013)
EnsemblRPLP1 - 15q23 [CytoView hg19]  RPLP1 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIRPLP1 [Mapview hg19]  RPLP1 [Mapview hg38]
OMIM180520   
Gene and transcription
Genbank (Entrez)AK026579 AK130958 AK311456 AY303789 BC003369
RefSeq transcript (Entrez)NM_001003 NM_213725
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)RPLP1
Cluster EST : UnigeneHs.356502 [ NCBI ]
CGAP (NCI)Hs.356502
Alternative Splicing : Fast-db (Paris)GSHG0009970
Alternative Splicing GalleryENSG00000137818
Gene ExpressionRPLP1 [ NCBI-GEO ]   RPLP1 [ EBI - ARRAY_EXPRESS ]   RPLP1 [ SEEK ]   RPLP1 [ MEM ]
Gene Expression Viewer (FireBrowse)RPLP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6176
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05386 (Uniprot)
NextProtP05386  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05386
Splice isoforms : SwissVarP05386 (Swissvar)
PhosPhoSitePlusP05386
Domains : Interpro (EBI)Ribosomal_L12   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations6176
Blocks (Seattle)RPLP1
PDB (SRS)2LBF    4BEH    4V6X   
PDB (PDBSum)2LBF    4BEH    4V6X   
PDB (IMB)2LBF    4BEH    4V6X   
PDB (RSDB)2LBF    4BEH    4V6X   
Structural Biology KnowledgeBase2LBF    4BEH    4V6X   
SCOP (Structural Classification of Proteins)2LBF    4BEH    4V6X   
CATH (Classification of proteins structures)2LBF    4BEH    4V6X   
SuperfamilyP05386
Human Protein AtlasENSG00000137818
Peptide AtlasP05386
HPRD01611
IPIIPI00008527   IPI00103904   IPI00412779   
Protein Interaction databases
DIP (DOE-UCLA)P05386
IntAct (EBI)P05386
FunCoupENSG00000137818
BioGRIDRPLP1
STRING (EMBL)RPLP1
ZODIACRPLP1
Ontologies - Pathways
QuickGOP05386
Ontology : AmiGOnuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  translational elongation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  protein kinase activator activity  preribosome, large subunit precursor  activation of protein kinase activity  positive regulation of protein kinase activity  extracellular exosome  large ribosomal subunit rRNA binding  
Ontology : EGO-EBInuclear-transcribed mRNA catabolic process, nonsense-mediated decay  cytoplasmic translation  structural constituent of ribosome  structural constituent of ribosome  protein binding  cytoplasm  cytosol  focal adhesion  rRNA processing  translation  translational initiation  translational elongation  SRP-dependent cotranslational protein targeting to membrane  viral transcription  cytosolic large ribosomal subunit  protein kinase activator activity  preribosome, large subunit precursor  activation of protein kinase activity  positive regulation of protein kinase activity  extracellular exosome  large ribosomal subunit rRNA binding  
Pathways : KEGGRibosome   
NDEx Network
Atlas of Cancer Signalling NetworkRPLP1
Wikipedia pathwaysRPLP1
Orthology - Evolution
OrthoDB6176
GeneTree (enSembl)ENSG00000137818
Phylogenetic Trees/Animal Genes : TreeFamRPLP1
Homologs : HomoloGeneRPLP1
Homology/Alignments : Family Browser (UCSC)RPLP1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerRPLP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)RPLP1
dbVarRPLP1
ClinVarRPLP1
1000_GenomesRPLP1 
Exome Variant ServerRPLP1
ExAC (Exome Aggregation Consortium)RPLP1 (select the gene name)
SNP (GeneSNP Utah)RPLP1
SNP : HGBaseRPLP1
Genetic variants : HAPMAPRPLP1
Genomic Variants (DGV)RPLP1 [DGVbeta]
Mutations
ICGC Data PortalRPLP1 
TCGA Data PortalRPLP1 
Broad Tumor PortalRPLP1
OASIS PortalRPLP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICRPLP1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch RPLP1
DgiDB (Drug Gene Interaction Database)RPLP1
DoCM (Curated mutations)RPLP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)RPLP1 (select a term)
intoGenRPLP1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)15:69745159-69747884
CONAN: Copy Number AnalysisRPLP1 
Mutations and Diseases : HGMDRPLP1
OMIM180520   
MedgenRPLP1
Genetic Testing Registry RPLP1
NextProtP05386 [Medical]
TSGene6176
GENETestsRPLP1
Huge Navigator RPLP1 [HugePedia]  RPLP1 [HugeCancerGEM]
snp3D : Map Gene to Disease6176
BioCentury BCIQRPLP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6176
Chemical/Pharm GKB GenePA34775
Clinical trialRPLP1
Miscellaneous
canSAR (ICR)RPLP1 (select the gene name)
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineRPLP1
GoPubMedRPLP1
iHOPRPLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:02:43 CEST 2016

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